Wall clock time and date at job start Mon Mar 30 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48508 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47328 * 299.99936 * 3 2 1 6 6 H 1.48501 * 109.47068 * 60.00263 * 3 2 1 7 7 C 1.38806 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99406 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99772 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46857 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47339 * 180.02562 * 12 11 10 14 14 C 1.34235 * 117.00385 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99671 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00281 * 180.02562 * 14 13 12 17 17 H 1.08995 * 115.56254 * 325.73669 * 16 14 13 18 18 C 1.53127 * 117.51423 * 111.53736 * 16 14 13 19 19 C 1.52461 * 117.51510 * 180.02562 * 16 14 13 20 20 C 1.53259 * 128.58825 * 134.94884 * 19 16 14 21 21 C 1.53887 * 86.88297 * 194.89111 * 20 19 16 22 22 C 1.53256 * 128.58333 * 10.15193 * 19 16 14 23 23 H 0.97001 * 120.00515 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46773 * 60.00158 * 10 9 7 25 25 H 1.08992 * 109.47421 * 300.00230 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00365 * 11 10 9 27 27 H 1.09001 * 109.47194 * 60.00546 * 11 10 9 28 28 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 29 29 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 30 30 H 1.08991 * 117.51688 * 214.89593 * 18 16 14 31 31 H 1.08998 * 117.51211 * 0.02562 * 18 16 14 32 32 H 1.08997 * 113.64154 * 309.39384 * 20 19 16 33 33 H 1.09002 * 113.64125 * 80.39028 * 20 19 16 34 34 H 1.09003 * 113.59016 * 270.39070 * 21 20 19 35 35 H 1.09001 * 113.58646 * 139.57248 * 21 20 19 36 36 H 1.09001 * 113.64777 * 279.61249 * 22 19 16 37 37 H 1.09000 * 113.64808 * 50.52517 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9794 -5.3243 -0.0017 12 6 3.1514 -6.3077 -0.0024 13 8 2.6423 -7.6675 -0.0026 14 6 3.5487 -8.6576 -0.0038 15 8 4.7284 -8.3967 -0.0041 16 6 3.0948 -10.0946 -0.0046 17 1 2.1785 -10.2988 0.5492 18 6 3.3566 -10.9184 -1.2686 19 6 4.1721 -11.1735 -0.0053 20 6 4.2486 -12.4484 0.8417 21 6 5.7254 -12.5401 0.4188 22 6 5.6819 -11.0167 0.2059 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7317 0.8875 25 1 3.1239 -3.7310 -0.8924 26 1 1.3716 -5.4845 0.8889 27 1 1.3699 -5.4843 -0.8911 28 1 3.7595 -6.1476 -0.8928 29 1 3.7606 -6.1476 0.8871 30 1 2.6123 -11.6644 -1.5466 31 1 3.8575 -10.4208 -2.0991 32 1 4.1094 -12.2734 1.9085 33 1 3.6334 -13.2637 0.4611 34 1 5.8817 -13.1048 -0.5004 35 1 6.3914 -12.8491 1.2244 36 1 6.2157 -10.6842 -0.6844 37 1 5.9417 -10.4420 1.0949 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805492733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:20 Heat of formation + Delta-G solvation = -73.683570 kcal Electronic energy + Delta-G solvation = -17417.651151 eV Core-core repulsion = 14479.641948 eV Total energy + Delta-G solvation = -2938.009203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.83398 -40.08026 -37.72009 -35.01536 -34.67256 -34.56231 -28.47289 -27.63985 -26.61094 -25.47323 -23.98580 -22.75964 -21.57985 -19.61814 -19.30973 -18.80448 -17.77815 -17.47620 -16.91731 -16.28093 -16.18171 -16.10030 -15.84147 -15.15923 -14.56098 -14.17898 -13.84122 -13.69423 -13.29237 -13.15426 -13.05687 -12.96989 -12.64012 -12.49981 -12.42721 -12.40879 -12.35925 -11.71653 -11.55604 -11.47269 -11.17621 -11.13421 -11.06644 -10.76870 -10.38465 -8.70445 -8.39895 -6.16698 1.01492 1.25251 1.37708 1.40567 1.51664 1.81334 2.25101 2.64530 2.94662 3.24370 3.36390 3.57126 3.64112 3.80319 3.82072 3.89249 3.94897 3.96818 4.11791 4.28604 4.45917 4.49800 4.59812 4.64744 4.75344 4.84855 4.87360 4.96133 4.97745 5.09364 5.10256 5.12731 5.33684 5.38413 5.41622 5.50199 6.16313 6.68014 7.02618 8.69767 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.060231 B = 0.002549 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.768235 B =10981.684595 C =11280.693277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.073 0.927 9 S -0.185 6.185 10 C -0.091 4.091 11 C -0.085 4.085 12 C 0.081 3.919 13 O -0.357 6.357 14 C 0.485 3.515 15 O -0.533 6.533 16 C -0.170 4.170 17 H 0.154 0.846 18 C -0.103 4.103 19 C -0.134 4.134 20 C -0.089 4.089 21 C -0.132 4.132 22 C -0.100 4.100 23 H 0.272 0.728 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 -25.762 -0.206 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.240 4.240 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.273 6.273 14 C 0.330 3.670 15 O -0.423 6.423 16 C -0.189 4.189 17 H 0.171 0.829 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.138 4.138 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.128 -25.720 -0.205 26.690 hybrid contribution 1.663 1.909 0.042 2.533 sum 8.791 -23.811 -0.163 25.382 Atomic orbital electron populations 1.70147 1.07645 1.28597 1.47879 1.26078 0.96072 1.03138 0.93708 0.84945 0.78363 0.76579 0.78345 1.18761 1.19606 1.19603 1.23077 0.94808 0.91884 1.58979 0.90833 1.84633 1.13055 1.00865 1.97059 1.23062 1.00805 0.96522 1.03625 1.21101 0.96988 0.89841 1.04454 1.23010 0.96621 0.77068 1.02757 1.86468 1.40708 1.16611 1.83545 1.23299 0.83890 0.88432 0.71342 1.90638 1.19609 1.85307 1.46756 1.21859 1.04420 0.84156 1.08468 0.82882 1.23038 1.01488 0.99961 0.89446 1.22715 0.93235 0.96169 1.01303 1.22537 0.97086 0.93751 0.99180 1.22793 0.96812 0.94773 1.02515 1.22416 0.92545 0.97437 1.01357 0.91864 0.91389 0.91360 0.90259 0.90221 0.91002 0.91028 0.83954 0.88566 0.89121 0.88947 0.88931 0.90271 0.92529 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.64 13.22 21.65 0.29 -54.36 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.06 29.55 68.60 2.03 46.08 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.24 9.50 67.96 0.65 -30.60 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 9 S -0.18 -9.83 21.44 -56.49 -1.21 -11.04 16 10 C -0.09 -3.67 5.67 71.98 0.41 -3.27 16 11 C -0.09 -2.80 5.60 30.59 0.17 -2.63 16 12 C 0.08 2.37 5.47 71.98 0.39 2.76 16 13 O -0.36 -10.08 10.22 -51.47 -0.53 -10.60 16 14 C 0.49 12.83 7.74 71.23 0.55 13.38 16 15 O -0.53 -16.73 14.89 21.97 0.33 -16.41 16 16 C -0.17 -3.08 6.30 -11.68 -0.07 -3.16 16 17 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 18 C -0.10 -1.39 10.24 30.47 0.31 -1.08 16 19 C -0.13 -2.08 2.88 -52.35 -0.15 -2.23 16 20 C -0.09 -0.93 8.10 30.98 0.25 -0.68 16 21 C -0.13 -1.49 8.08 31.19 0.25 -1.24 16 22 C -0.10 -1.79 6.48 30.98 0.20 -1.59 16 23 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 29 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 Total: -1.00 -69.34 330.32 5.37 -63.98 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.04 Total: 11.36 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 3.43 Total: -29.01 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.29 Total: -54.36 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.20 Total: -27.01 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -9.83 SS G_CDS: -1.21 Total: -11.04 kcal Total: -69.34 5.37 -63.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805492733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.708 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds