Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32708 * 124.62621 * 2 1 4 4 C 1.46948 * 124.63110 * 0.27143 * 3 2 1 5 5 O 1.21535 * 119.99726 * 354.93500 * 4 3 2 6 6 O 1.34797 * 120.00128 * 174.94290 * 4 3 2 7 7 C 1.45199 * 116.99918 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47076 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47017 * 179.97438 * 8 7 6 10 10 S 1.81001 * 109.46648 * 179.97438 * 9 8 7 11 11 C 1.76209 * 99.99628 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00034 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99703 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00159 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99571 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47509 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47131 * 119.99717 * 15 13 11 18 18 H 1.48497 * 109.47345 * 239.99342 * 15 13 11 19 19 C 1.51118 * 110.73977 * 179.97438 * 3 2 1 20 20 C 1.54572 * 104.84436 * 16.61030 * 19 3 2 21 21 C 1.51114 * 124.62639 * 180.02562 * 2 1 3 22 22 H 1.09009 * 109.47169 * 64.31809 * 1 2 3 23 23 H 1.08996 * 109.47246 * 184.31538 * 1 2 3 24 24 H 1.08998 * 109.47212 * 304.32166 * 1 2 3 25 25 H 1.09003 * 109.47125 * 299.99616 * 7 6 4 26 26 H 1.08991 * 109.47361 * 59.99649 * 7 6 4 27 27 H 1.09003 * 109.46789 * 299.99771 * 8 7 6 28 28 H 1.08999 * 109.47171 * 59.99895 * 8 7 6 29 29 H 1.08998 * 109.47032 * 299.99211 * 9 8 7 30 30 H 1.08999 * 109.47119 * 60.00006 * 9 8 7 31 31 H 0.96994 * 119.99642 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.36050 * 135.44826 * 19 3 2 33 33 H 1.08994 * 110.36311 * 257.76617 * 19 3 2 34 34 H 1.09002 * 110.97993 * 93.05971 * 20 19 3 35 35 H 1.09005 * 110.97763 * 216.81305 * 20 19 3 36 36 H 1.08990 * 110.36687 * 44.55083 * 21 2 1 37 37 H 1.09003 * 110.35982 * 282.23246 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2611 1.0920 0.0000 4 6 1.7407 2.4662 0.0057 5 8 0.5446 2.6634 -0.0820 6 8 2.5898 3.5081 0.1081 7 6 2.0054 4.8373 0.1067 8 6 3.1159 5.8827 0.2293 9 6 2.5001 7.2834 0.2271 10 16 3.8138 8.5200 0.3729 11 6 2.8500 9.9949 0.3448 12 1 1.7752 9.9360 0.2566 13 6 3.4723 11.2323 0.4348 14 7 4.7822 11.3041 0.5417 15 14 2.4504 12.7958 0.4057 16 1 1.0129 12.4454 0.2799 17 1 2.6676 13.5526 1.6649 18 1 2.8586 13.6325 -0.7512 19 6 3.7281 0.7293 0.0006 20 6 3.7691 -0.7557 -0.4261 21 6 2.3657 -1.2435 -0.0006 22 1 -0.3634 0.4454 -0.9262 23 1 -0.3633 -1.0247 0.0773 24 1 -0.3633 0.5794 0.8487 25 1 1.4608 4.9938 -0.8245 26 1 1.3204 4.9340 0.9489 27 1 3.6608 5.7264 1.1602 28 1 3.8006 5.7860 -0.6133 29 1 1.9555 7.4395 -0.7041 30 1 1.8152 7.3805 1.0694 31 1 5.2170 12.1688 0.6050 32 1 4.2713 1.3451 -0.7162 33 1 4.1479 0.8488 0.9994 34 1 3.9037 -0.8486 -1.5038 35 1 4.5500 -1.2946 0.1106 36 1 1.9821 -1.9690 -0.7177 37 1 2.4030 -1.6790 0.9980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805512440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = -100.230279 kcal Electronic energy + Delta-G solvation = -17498.507869 eV Core-core repulsion = 14559.347514 eV Total energy + Delta-G solvation = -2939.160355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55145 -38.66356 -36.49916 -33.46113 -32.44028 -31.63948 -29.69169 -26.58682 -26.03717 -25.43174 -22.76606 -21.36747 -21.12749 -18.62014 -17.47550 -17.15751 -16.64057 -16.07787 -15.83312 -14.81882 -14.59174 -14.53457 -13.91644 -13.61498 -13.41299 -13.08856 -12.97195 -12.59089 -12.55011 -12.10949 -11.94838 -11.75889 -11.46389 -11.40018 -11.29266 -11.13048 -10.95869 -10.87581 -10.67410 -10.38806 -10.24170 -9.61638 -9.08589 -9.08108 -8.34485 -6.55831 -6.24579 -3.95361 0.92996 2.66946 2.84859 3.20801 3.23034 3.30093 3.56153 4.12301 4.19791 4.20994 4.64622 4.69538 4.77244 5.11193 5.11416 5.15646 5.22028 5.24747 5.29015 5.38655 5.43197 5.50724 5.52092 5.56614 5.64234 5.76606 5.79984 5.85588 5.89983 6.09335 6.20556 6.23443 6.47182 6.49468 6.69864 7.59816 7.78935 8.35575 9.21977 10.83706 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049283 B = 0.002736 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.015709 B =10231.477491 C =10742.794151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.035 4.035 3 C -0.183 4.183 4 C 0.512 3.488 5 O -0.511 6.511 6 O -0.350 6.350 7 C 0.073 3.927 8 C -0.097 4.097 9 C -0.114 4.114 10 S -0.125 6.125 11 C -0.517 4.517 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.869 5.869 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.099 4.099 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.267 0.733 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 -24.877 -1.137 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.036 4.036 3 C -0.185 4.185 4 C 0.358 3.642 5 O -0.402 6.402 6 O -0.267 6.267 7 C -0.002 4.002 8 C -0.136 4.136 9 C -0.263 4.263 10 S 0.103 5.897 11 C -0.665 4.665 12 H 0.092 0.908 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.119 4.119 20 C -0.162 4.162 21 C -0.136 4.136 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.178 -24.767 -1.057 24.992 hybrid contribution -2.070 1.400 -0.094 2.501 sum -5.248 -23.367 -1.152 23.976 Atomic orbital electron populations 1.20733 0.89863 1.02250 1.04019 1.22946 0.96183 0.94239 0.90250 1.20862 0.97547 0.89290 1.10752 1.20788 0.84451 0.85842 0.73127 1.90832 1.16671 1.86478 1.46209 1.86572 1.40695 1.16116 1.83271 1.23249 0.96924 0.77521 1.02477 1.21278 0.96935 0.91162 1.04203 1.23179 1.03075 0.96679 1.03331 1.84656 1.10456 0.98382 1.96167 1.22741 0.94781 0.90960 1.58035 0.90796 1.25025 0.95303 0.98944 0.94554 1.70028 1.08081 1.25503 1.46894 0.86091 0.79889 0.81508 0.77900 1.19582 1.20541 1.20547 1.21128 0.91959 0.95994 1.02789 1.22442 0.96374 0.95525 1.01811 1.21446 0.94204 0.95260 1.02707 0.89903 0.91675 0.90111 0.91229 0.91230 0.90373 0.90374 0.91740 0.91746 0.92308 0.90114 0.90026 0.90684 0.90234 0.89945 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 8.80 36.01 0.32 -0.66 16 2 C -0.04 -0.32 6.23 -101.03 -0.63 -0.95 16 3 C -0.18 -2.05 6.09 -102.78 -0.63 -2.67 16 4 C 0.51 7.32 7.92 34.26 0.27 7.59 16 5 O -0.51 -8.24 14.55 -19.29 -0.28 -8.52 16 6 O -0.35 -5.23 10.05 -40.76 -0.41 -5.64 16 7 C 0.07 1.12 5.48 37.16 0.20 1.32 16 8 C -0.10 -1.64 5.60 -26.73 -0.15 -1.79 16 9 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 10 S -0.12 -3.27 21.44 -107.50 -2.30 -5.58 16 11 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 12 H 0.07 2.07 7.80 -52.49 -0.41 1.66 16 13 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.08 -0.72 6.56 -26.85 -0.18 -0.90 16 20 C -0.12 -0.78 7.16 -25.09 -0.18 -0.96 16 21 C -0.10 -0.62 6.74 -26.87 -0.18 -0.80 16 22 H 0.08 0.80 7.93 -51.92 -0.41 0.39 16 23 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 24 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -32.23 328.93 -8.92 -41.15 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.85 Total: -3.10 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.74 Total: -14.59 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.73 Total: -25.27 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.69 Total: -14.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.30 Total: -5.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.23 -8.92 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805512440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.084 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds