Wall clock time and date at job start Mon Mar 30 2020 01:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32708 * 124.62621 * 2 1 4 4 C 1.46948 * 124.63110 * 0.27143 * 3 2 1 5 5 O 1.21535 * 119.99726 * 354.93500 * 4 3 2 6 6 O 1.34797 * 120.00128 * 174.94290 * 4 3 2 7 7 C 1.45199 * 116.99918 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47076 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47017 * 179.97438 * 8 7 6 10 10 S 1.81001 * 109.46648 * 179.97438 * 9 8 7 11 11 C 1.76209 * 99.99628 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00034 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99703 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00159 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99571 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47509 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47131 * 119.99717 * 15 13 11 18 18 H 1.48497 * 109.47345 * 239.99342 * 15 13 11 19 19 C 1.51118 * 110.73977 * 179.97438 * 3 2 1 20 20 C 1.54572 * 104.84436 * 16.61030 * 19 3 2 21 21 C 1.51114 * 124.62639 * 180.02562 * 2 1 3 22 22 H 1.09009 * 109.47169 * 64.31809 * 1 2 3 23 23 H 1.08996 * 109.47246 * 184.31538 * 1 2 3 24 24 H 1.08998 * 109.47212 * 304.32166 * 1 2 3 25 25 H 1.09003 * 109.47125 * 299.99616 * 7 6 4 26 26 H 1.08991 * 109.47361 * 59.99649 * 7 6 4 27 27 H 1.09003 * 109.46789 * 299.99771 * 8 7 6 28 28 H 1.08999 * 109.47171 * 59.99895 * 8 7 6 29 29 H 1.08998 * 109.47032 * 299.99211 * 9 8 7 30 30 H 1.08999 * 109.47119 * 60.00006 * 9 8 7 31 31 H 0.96994 * 119.99642 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.36050 * 135.44826 * 19 3 2 33 33 H 1.08994 * 110.36311 * 257.76617 * 19 3 2 34 34 H 1.09002 * 110.97993 * 93.05971 * 20 19 3 35 35 H 1.09005 * 110.97763 * 216.81305 * 20 19 3 36 36 H 1.08990 * 110.36687 * 44.55083 * 21 2 1 37 37 H 1.09003 * 110.35982 * 282.23246 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2611 1.0920 0.0000 4 6 1.7407 2.4662 0.0057 5 8 0.5446 2.6634 -0.0820 6 8 2.5898 3.5081 0.1081 7 6 2.0054 4.8373 0.1067 8 6 3.1159 5.8827 0.2293 9 6 2.5001 7.2834 0.2271 10 16 3.8138 8.5200 0.3729 11 6 2.8500 9.9949 0.3448 12 1 1.7752 9.9360 0.2566 13 6 3.4723 11.2323 0.4348 14 7 4.7822 11.3041 0.5417 15 14 2.4504 12.7958 0.4057 16 1 1.0129 12.4454 0.2799 17 1 2.6676 13.5526 1.6649 18 1 2.8586 13.6325 -0.7512 19 6 3.7281 0.7293 0.0006 20 6 3.7691 -0.7557 -0.4261 21 6 2.3657 -1.2435 -0.0006 22 1 -0.3634 0.4454 -0.9262 23 1 -0.3633 -1.0247 0.0773 24 1 -0.3633 0.5794 0.8487 25 1 1.4608 4.9938 -0.8245 26 1 1.3204 4.9340 0.9489 27 1 3.6608 5.7264 1.1602 28 1 3.8006 5.7860 -0.6133 29 1 1.9555 7.4395 -0.7041 30 1 1.8152 7.3805 1.0694 31 1 5.2170 12.1688 0.6050 32 1 4.2713 1.3451 -0.7162 33 1 4.1479 0.8488 0.9994 34 1 3.9037 -0.8486 -1.5038 35 1 4.5500 -1.2946 0.1106 36 1 1.9821 -1.9690 -0.7177 37 1 2.4030 -1.6790 0.9980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805512440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:53 Heat of formation + Delta-G solvation = -117.206169 kcal Electronic energy + Delta-G solvation = -17499.243999 eV Core-core repulsion = 14559.347514 eV Total energy + Delta-G solvation = -2939.896485 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59930 -39.45036 -37.65911 -34.92467 -34.59805 -32.30431 -30.45169 -28.14479 -27.40621 -26.69904 -23.80753 -22.71944 -21.83326 -19.76044 -19.34926 -18.33022 -17.78803 -16.96022 -16.91604 -16.55105 -16.17500 -15.82849 -15.21074 -14.57562 -14.43870 -14.23239 -14.00349 -13.80030 -13.63423 -13.41254 -13.15083 -12.97149 -12.67269 -12.63058 -12.41695 -12.40308 -12.34779 -12.00823 -11.90232 -11.64005 -11.54156 -11.34791 -11.17440 -10.38359 -9.82022 -8.70263 -8.39763 -6.16578 0.05983 1.26885 1.37830 1.43481 1.53801 1.84515 1.87989 2.25393 2.94839 3.26128 3.42200 3.57058 3.80741 3.86211 3.95497 4.07337 4.13155 4.20664 4.29123 4.43183 4.50357 4.63147 4.64660 4.74680 4.85823 4.95617 4.97366 4.97847 5.02188 5.07985 5.19923 5.30745 5.36635 5.38677 5.48329 5.50824 6.16574 6.68114 7.02769 8.70002 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049283 B = 0.002736 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.015709 B =10231.477491 C =10742.794151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.015 4.015 3 C -0.221 4.221 4 C 0.506 3.494 5 O -0.538 6.538 6 O -0.355 6.355 7 C 0.081 3.919 8 C -0.085 4.085 9 C -0.091 4.091 10 S -0.185 6.185 11 C -0.540 4.540 12 H 0.074 0.926 13 C 0.015 3.985 14 N -0.907 5.907 15 Si 0.996 3.004 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.082 4.082 20 C -0.118 4.118 21 C -0.096 4.096 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.272 0.728 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -26.599 -1.202 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.016 4.016 3 C -0.222 4.222 4 C 0.354 3.646 5 O -0.431 6.431 6 O -0.272 6.272 7 C 0.006 3.994 8 C -0.123 4.123 9 C -0.240 4.240 10 S 0.044 5.956 11 C -0.687 4.687 12 H 0.092 0.908 13 C -0.190 4.190 14 N -0.543 5.543 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.119 4.119 20 C -0.155 4.155 21 C -0.133 4.133 22 H 0.090 0.910 23 H 0.115 0.885 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.975 -26.508 -1.123 26.828 hybrid contribution -1.862 1.800 -0.074 2.591 sum -5.838 -24.708 -1.198 25.417 Atomic orbital electron populations 1.20784 0.89819 1.03857 1.02734 1.23426 0.96551 0.95075 0.86564 1.21018 0.99265 0.87905 1.13973 1.21449 0.84171 0.86656 0.72282 1.90808 1.17600 1.86844 1.47835 1.86564 1.41044 1.16057 1.83533 1.23008 0.95973 0.77705 1.02740 1.21092 0.97229 0.89671 1.04318 1.23062 1.00930 0.96391 1.03631 1.84637 1.14279 1.00294 1.96395 1.23081 0.94991 0.92170 1.58502 0.90818 1.26077 0.96567 1.02630 0.93696 1.70150 1.09915 1.26703 1.47546 0.84945 0.78254 0.76679 0.78354 1.18745 1.19590 1.19599 1.21163 0.90311 0.97831 1.02627 1.22465 0.97144 0.93503 1.02389 1.21573 0.93268 0.93999 1.04419 0.91009 0.88531 0.91612 0.91000 0.90976 0.90296 0.90303 0.91336 0.91335 0.91861 0.91227 0.90076 0.90237 0.88277 0.87686 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.80 71.24 0.63 -1.22 16 2 C -0.02 -0.25 6.23 -17.49 -0.11 -0.36 16 3 C -0.22 -4.77 6.09 -18.62 -0.11 -4.88 16 4 C 0.51 14.60 7.92 70.10 0.56 15.15 16 5 O -0.54 -17.59 14.55 19.72 0.29 -17.31 16 6 O -0.36 -10.68 10.05 -57.08 -0.57 -11.26 16 7 C 0.08 2.46 5.48 71.98 0.39 2.86 16 8 C -0.08 -2.84 5.60 30.60 0.17 -2.67 16 9 C -0.09 -3.72 5.67 71.98 0.41 -3.31 16 10 S -0.18 -9.89 21.44 -56.49 -1.21 -11.10 16 11 C -0.54 -31.37 9.50 67.96 0.65 -30.73 16 12 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 13 C 0.02 0.88 5.49 84.86 0.47 1.34 16 14 N -0.91 -54.86 13.22 21.65 0.29 -54.58 16 15 Si 1.00 44.20 29.55 68.60 2.03 46.22 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 C -0.08 -1.37 6.56 30.52 0.20 -1.17 16 20 C -0.12 -1.15 7.16 31.66 0.23 -0.92 16 21 C -0.10 -0.85 6.74 30.51 0.21 -0.65 16 22 H 0.07 1.34 7.93 -2.38 -0.02 1.32 16 23 H 0.10 0.91 8.13 -2.39 -0.02 0.89 16 24 H 0.07 1.28 7.68 -2.39 -0.02 1.26 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 30 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.39 328.93 5.53 -64.86 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.04 Total: 9.72 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.68 Total: -26.56 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.29 Total: -54.58 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.29 Total: -28.56 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.21 Total: -11.10 kcal Total: -70.39 5.53 -64.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805512440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.346 kcal (2) G-P(sol) polarization free energy of solvation -70.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds