Wall clock time and date at job start Mon Mar 30 2020 01:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47531 * 179.97438 * 12 11 10 14 14 C 1.34231 * 117.00207 * 179.97438 * 13 12 11 15 15 O 1.20830 * 119.99657 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.52436 * 325.58087 * 16 14 13 18 18 C 1.52995 * 117.45912 * 111.08281 * 16 14 13 19 19 H 1.08995 * 119.30063 * 356.28780 * 18 16 14 20 20 C 1.56219 * 116.99431 * 200.70389 * 18 16 14 21 21 C 1.54883 * 104.22841 * 272.14492 * 20 18 16 22 22 C 1.54887 * 102.75215 * 38.33049 * 21 20 18 23 23 C 1.52999 * 117.45882 * 180.09097 * 16 14 13 24 24 H 1.08999 * 119.29819 * 3.70564 * 23 16 14 25 25 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00184 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99813 * 11 10 9 30 30 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 31 31 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 32 32 H 1.09005 * 110.13378 * 153.61760 * 20 18 16 33 33 H 1.08998 * 110.91114 * 31.05754 * 20 18 16 34 34 H 1.09006 * 110.75839 * 280.01406 * 21 20 18 35 35 H 1.09004 * 110.91644 * 156.72271 * 21 20 18 36 36 H 1.08995 * 110.49317 * 203.38049 * 22 21 20 37 37 H 1.08999 * 110.59708 * 80.79001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5956 -3.2365 0.0026 12 6 5.8612 -4.7432 0.0044 13 8 7.2935 -4.9822 0.0039 14 6 7.6977 -6.2622 0.0058 15 8 6.8818 -7.1534 0.0074 16 6 9.1691 -6.5877 0.0060 17 1 9.8029 -5.8978 -0.5512 18 6 9.7528 -7.2149 1.2736 19 1 9.1130 -7.3487 2.1458 20 6 11.2971 -7.0965 1.4770 21 6 11.8733 -8.3351 0.7470 22 6 10.9697 -8.4443 -0.5063 23 6 9.5648 -8.0657 0.0061 24 1 8.7864 -8.8262 -0.0554 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4311 0.8927 27 1 3.6439 -3.4323 -0.8873 28 1 6.0385 -2.7901 -0.8877 29 1 6.0386 -2.7888 0.8922 30 1 5.4184 -5.1892 0.8950 31 1 5.4182 -5.1913 -0.8850 32 1 11.5396 -7.1326 2.5391 33 1 11.6791 -6.1785 1.0304 34 1 11.7821 -9.2265 1.3677 35 1 12.9121 -8.1700 0.4611 36 1 10.9733 -9.4638 -0.8916 37 1 11.2961 -7.7453 -1.2764 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805524930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:22 Heat of formation + Delta-G solvation = -84.791350 kcal Electronic energy + Delta-G solvation = -17364.175867 eV Core-core repulsion = 14425.684994 eV Total energy + Delta-G solvation = -2938.490873 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94952 -39.29761 -36.67345 -33.63155 -32.46348 -32.26121 -28.61018 -27.10882 -25.69747 -24.55221 -21.53068 -21.32510 -20.47646 -20.10332 -18.03647 -17.39843 -16.98164 -16.62998 -15.38589 -15.29763 -15.00357 -14.66316 -14.28417 -13.60762 -13.44370 -13.14675 -12.84697 -12.83357 -12.48790 -11.91852 -11.78276 -11.58237 -11.53927 -11.31016 -11.22912 -11.10494 -10.99135 -10.72262 -10.55439 -10.37767 -10.33731 -10.13388 -9.82965 -9.03210 -8.62360 -6.99082 -6.30670 -4.04099 1.90657 2.37899 2.99225 3.24503 3.28540 3.43421 3.53899 4.09543 4.20146 4.23980 4.29202 4.66649 4.67577 4.74110 4.81159 4.92531 4.97607 5.02828 5.08309 5.12775 5.14572 5.26911 5.37557 5.40619 5.56886 5.62418 5.62852 5.66686 5.76334 5.79724 5.92747 6.04273 6.32271 6.36726 6.56018 7.65839 7.92967 8.42211 9.14646 10.78709 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.056490 B = 0.002608 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.546962 B =10735.119699 C =11041.798676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.072 3.928 13 O -0.351 6.351 14 C 0.491 3.509 15 O -0.509 6.509 16 C -0.142 4.142 17 H 0.133 0.867 18 C -0.133 4.133 19 H 0.120 0.880 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.131 4.131 24 H 0.124 0.876 25 H 0.271 0.729 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.048 -15.029 1.095 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.003 4.003 13 O -0.267 6.267 14 C 0.334 3.666 15 O -0.397 6.397 16 C -0.161 4.161 17 H 0.151 0.849 18 C -0.151 4.151 19 H 0.138 0.862 20 C -0.133 4.133 21 C -0.161 4.161 22 C -0.134 4.134 23 C -0.149 4.149 24 H 0.142 0.858 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.304 -14.286 1.101 28.213 hybrid contribution -1.158 -0.185 -0.078 1.176 sum 23.146 -14.472 1.023 27.317 Atomic orbital electron populations 1.69943 1.05912 1.27757 1.48083 1.24798 0.94535 0.99046 0.93307 0.86665 0.81732 0.83175 0.79741 1.19324 1.20040 1.16137 1.22121 0.86950 0.97516 1.58616 0.89299 1.84164 1.11829 1.04291 1.97556 1.22947 0.95978 1.00093 1.04238 1.21326 0.95932 0.92240 1.04433 1.23251 0.76158 0.98045 1.02825 1.86457 1.28745 1.28172 1.83315 1.22463 0.90731 0.81023 0.72370 1.90668 1.55379 1.48151 1.45500 1.21899 0.90638 0.98529 1.05066 0.84912 1.23768 0.97166 1.02577 0.91624 0.86169 1.22358 0.90982 0.98662 1.01284 1.22686 0.99000 0.98200 0.96256 1.22020 0.91612 1.02056 0.97733 1.23361 0.99293 0.91479 1.00814 0.85849 0.91922 0.90966 0.91004 0.90236 0.90232 0.90989 0.90961 0.90658 0.90683 0.91017 0.90875 0.90592 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.45 27.74 -169.99 -4.71 16.73 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.50 -14.62 10.04 30.94 0.31 -14.31 16 8 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 9 S -0.21 -5.00 19.41 -107.50 -2.09 -7.08 16 10 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 11 C -0.10 -1.57 5.60 -26.74 -0.15 -1.72 16 12 C 0.07 1.03 5.47 37.15 0.20 1.23 16 13 O -0.35 -4.87 10.22 -39.26 -0.40 -5.27 16 14 C 0.49 6.47 7.74 36.00 0.28 6.75 16 15 O -0.51 -8.00 16.07 -18.75 -0.30 -8.30 16 16 C -0.14 -1.36 5.81 -91.78 -0.53 -1.89 16 17 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.13 -1.07 6.81 -88.48 -0.60 -1.67 16 19 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 20 C -0.10 -0.55 6.66 -24.01 -0.16 -0.71 16 21 C -0.12 -0.62 6.91 -24.74 -0.17 -0.79 16 22 C -0.10 -0.57 6.63 -25.07 -0.17 -0.74 16 23 C -0.13 -1.09 6.34 -89.54 -0.57 -1.66 16 24 H 0.12 1.17 7.78 -51.93 -0.40 0.76 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 27 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.59 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -31.97 325.63 -9.16 -41.14 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.90 Total: -1.85 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.44 Total: -14.34 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.78 Total: -25.93 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.70 Total: -13.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.09 Total: -7.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.97 -9.16 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805524930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.653 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds