Wall clock time and date at job start Mon Mar 30 2020 01:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47531 * 179.97438 * 12 11 10 14 14 C 1.34231 * 117.00207 * 179.97438 * 13 12 11 15 15 O 1.20830 * 119.99657 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.52436 * 325.58087 * 16 14 13 18 18 C 1.52995 * 117.45912 * 111.08281 * 16 14 13 19 19 H 1.08995 * 119.30063 * 356.28780 * 18 16 14 20 20 C 1.56219 * 116.99431 * 200.70389 * 18 16 14 21 21 C 1.54883 * 104.22841 * 272.14492 * 20 18 16 22 22 C 1.54887 * 102.75215 * 38.33049 * 21 20 18 23 23 C 1.52999 * 117.45882 * 180.09097 * 16 14 13 24 24 H 1.08999 * 119.29819 * 3.70564 * 23 16 14 25 25 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00184 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99813 * 11 10 9 30 30 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 31 31 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 32 32 H 1.09005 * 110.13378 * 153.61760 * 20 18 16 33 33 H 1.08998 * 110.91114 * 31.05754 * 20 18 16 34 34 H 1.09006 * 110.75839 * 280.01406 * 21 20 18 35 35 H 1.09004 * 110.91644 * 156.72271 * 21 20 18 36 36 H 1.08995 * 110.49317 * 203.38049 * 22 21 20 37 37 H 1.08999 * 110.59708 * 80.79001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5956 -3.2365 0.0026 12 6 5.8612 -4.7432 0.0044 13 8 7.2935 -4.9822 0.0039 14 6 7.6977 -6.2622 0.0058 15 8 6.8818 -7.1534 0.0074 16 6 9.1691 -6.5877 0.0060 17 1 9.8029 -5.8978 -0.5512 18 6 9.7528 -7.2149 1.2736 19 1 9.1130 -7.3487 2.1458 20 6 11.2971 -7.0965 1.4770 21 6 11.8733 -8.3351 0.7470 22 6 10.9697 -8.4443 -0.5063 23 6 9.5648 -8.0657 0.0061 24 1 8.7864 -8.8262 -0.0554 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4311 0.8927 27 1 3.6439 -3.4323 -0.8873 28 1 6.0385 -2.7901 -0.8877 29 1 6.0386 -2.7888 0.8922 30 1 5.4184 -5.1892 0.8950 31 1 5.4182 -5.1913 -0.8850 32 1 11.5396 -7.1326 2.5391 33 1 11.6791 -6.1785 1.0304 34 1 11.7821 -9.2265 1.3677 35 1 12.9121 -8.1700 0.4611 36 1 10.9733 -9.4638 -0.8916 37 1 11.2961 -7.7453 -1.2764 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805524930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:21 Heat of formation + Delta-G solvation = -101.630649 kcal Electronic energy + Delta-G solvation = -17364.906074 eV Core-core repulsion = 14425.684994 eV Total energy + Delta-G solvation = -2939.221079 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.89684 -40.05309 -37.79434 -34.98066 -34.69798 -32.83837 -29.08671 -28.45658 -27.82550 -25.52172 -22.81736 -22.01224 -21.21814 -20.72261 -19.66679 -18.89188 -17.99365 -17.75746 -17.11920 -16.37300 -16.14427 -15.74492 -15.58818 -14.95565 -14.40727 -14.29135 -14.11550 -13.99286 -13.79104 -13.37938 -13.06099 -12.66647 -12.57653 -12.45936 -12.33449 -12.25250 -11.99924 -11.81651 -11.72027 -11.59396 -11.50874 -11.21852 -11.17900 -10.80854 -10.62794 -9.02728 -8.53402 -6.25977 0.91420 1.03317 1.32235 1.38764 1.49052 1.78991 2.23782 2.55687 2.63939 2.84534 3.37325 3.57614 3.63364 3.78281 3.87061 3.90948 4.06940 4.10884 4.20775 4.24165 4.40787 4.45835 4.50153 4.61431 4.64581 4.79662 4.94640 4.96867 5.05272 5.12897 5.21303 5.22251 5.22810 5.35189 5.49961 5.67968 6.08784 6.59872 6.89956 8.59657 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.056490 B = 0.002608 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.546962 B =10735.119699 C =11041.798676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.526 4.526 8 H 0.051 0.949 9 S -0.205 6.205 10 C -0.074 4.074 11 C -0.087 4.087 12 C 0.077 3.923 13 O -0.352 6.352 14 C 0.489 3.511 15 O -0.541 6.541 16 C -0.152 4.152 17 H 0.152 0.848 18 C -0.130 4.130 19 H 0.111 0.889 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.094 4.094 23 C -0.133 4.133 24 H 0.106 0.894 25 H 0.277 0.723 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.167 -14.691 1.151 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.150 1.150 7 C -0.674 4.674 8 H 0.069 0.931 9 S 0.023 5.977 10 C -0.223 4.223 11 C -0.125 4.125 12 C 0.002 3.998 13 O -0.268 6.268 14 C 0.334 3.666 15 O -0.431 6.431 16 C -0.171 4.171 17 H 0.170 0.830 18 C -0.148 4.148 19 H 0.129 0.871 20 C -0.129 4.129 21 C -0.157 4.157 22 C -0.131 4.131 23 C -0.151 4.151 24 H 0.124 0.876 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 27.435 -13.957 1.160 30.803 hybrid contribution -2.158 -0.448 -0.091 2.206 sum 25.277 -14.405 1.069 29.113 Atomic orbital electron populations 1.70046 1.07708 1.29189 1.49023 1.25817 0.95466 1.02915 0.92663 0.85691 0.80792 0.78421 0.80307 1.18501 1.18730 1.14981 1.22348 0.90076 0.96345 1.58606 0.93102 1.83798 1.07502 1.08769 1.97593 1.22971 0.98811 0.96277 1.04227 1.21142 0.92945 0.93303 1.05141 1.23050 0.76881 0.96952 1.02945 1.86453 1.28072 1.28885 1.83389 1.23222 0.92088 0.80211 0.71096 1.90653 1.56561 1.48773 1.47104 1.22040 0.88308 0.99827 1.06880 0.83042 1.23921 0.98643 1.01430 0.90840 0.87060 1.22414 0.88848 0.99483 1.02162 1.22692 0.99587 0.97844 0.95566 1.22070 0.89966 1.02660 0.98400 1.23449 1.00159 0.90248 1.01269 0.87619 0.91344 0.91053 0.91082 0.89491 0.89540 0.90971 0.90930 0.89756 0.89871 0.90843 0.89185 0.89882 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.93 13.97 21.65 0.30 -56.63 16 2 C 0.04 2.13 5.50 84.86 0.47 2.60 16 3 Si 0.93 43.83 27.74 68.60 1.90 45.74 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.23 -10.23 6.74 99.48 0.67 -9.56 16 7 C -0.53 -31.08 10.04 67.95 0.68 -30.39 16 8 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 9 S -0.20 -9.75 19.41 -56.49 -1.10 -10.85 16 10 C -0.07 -2.82 5.67 71.98 0.41 -2.41 16 11 C -0.09 -2.56 5.60 30.59 0.17 -2.39 16 12 C 0.08 2.12 5.47 71.98 0.39 2.52 16 13 O -0.35 -9.36 10.22 -51.42 -0.53 -9.88 16 14 C 0.49 12.59 7.74 71.24 0.55 13.14 16 15 O -0.54 -17.12 16.07 21.95 0.35 -16.76 16 16 C -0.15 -2.69 5.81 -11.54 -0.07 -2.76 16 17 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.13 -1.91 6.81 -9.40 -0.06 -1.97 16 19 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.09 -0.82 6.66 32.36 0.22 -0.61 16 21 C -0.12 -0.85 6.91 31.88 0.22 -0.63 16 22 C -0.09 -0.89 6.63 31.67 0.21 -0.68 16 23 C -0.13 -2.06 6.34 -10.09 -0.06 -2.12 16 24 H 0.11 2.01 7.78 -2.39 -0.02 1.99 16 25 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 26 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 31 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -69.30 325.63 5.06 -64.24 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.00 Total: 9.85 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.12 Total: -25.70 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.30 Total: -56.63 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.17 Total: -26.64 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.74 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.10 Total: -10.85 kcal Total: -69.30 5.06 -64.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805524930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.388 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds