Wall clock time and date at job start Mon Mar 30 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48503 * 109.46797 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47294 * 299.99950 * 3 2 1 6 6 H 1.48495 * 109.47318 * 60.00152 * 3 2 1 7 7 C 1.38795 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99855 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00041 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47331 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47432 * 179.97438 * 12 11 10 14 14 C 1.34797 * 117.00102 * 179.97438 * 13 12 11 15 15 O 1.21535 * 120.00219 * 0.02562 * 14 13 12 16 16 C 1.46954 * 119.99877 * 180.02562 * 14 13 12 17 17 C 1.31653 * 118.10975 * 180.02562 * 16 14 13 18 18 C 1.50088 * 123.77882 * 180.39751 * 17 16 14 19 19 C 1.53014 * 110.13323 * 342.85018 * 18 17 16 20 20 C 1.53055 * 108.46937 * 49.72883 * 19 18 17 21 21 C 1.50093 * 118.11137 * 0.02562 * 16 14 13 22 22 H 0.96997 * 120.00341 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46943 * 60.00181 * 10 9 7 24 24 H 1.09000 * 109.47390 * 300.00211 * 10 9 7 25 25 H 1.08994 * 109.47119 * 59.99783 * 11 10 9 26 26 H 1.09001 * 109.47353 * 299.99887 * 11 10 9 27 27 H 1.09006 * 109.47157 * 59.99516 * 12 11 10 28 28 H 1.09000 * 109.46996 * 300.00040 * 12 11 10 29 29 H 1.08001 * 118.10439 * 0.42167 * 17 16 14 30 30 H 1.09002 * 109.36364 * 103.05155 * 18 17 16 31 31 H 1.09003 * 109.36024 * 222.64810 * 18 17 16 32 32 H 1.09003 * 109.62613 * 169.47044 * 19 18 17 33 33 H 1.09002 * 109.62830 * 290.05265 * 19 18 17 34 34 H 1.08995 * 109.46435 * 172.19182 * 20 19 18 35 35 H 1.09004 * 109.66002 * 51.69236 * 20 19 18 36 36 H 1.09002 * 109.36216 * 283.03499 * 21 16 14 37 37 H 1.08998 * 109.36150 * 42.76529 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1515 -6.3077 0.0008 13 8 2.6424 -7.6674 0.0020 14 6 3.5526 -8.6617 0.0021 15 8 4.7392 -8.3993 0.0017 16 6 3.1100 -10.0630 0.0028 17 6 4.0305 -11.0042 0.0034 18 6 3.7221 -12.4731 -0.0045 19 6 2.2682 -12.7082 0.4106 20 6 1.3718 -11.7858 -0.4189 21 6 1.6346 -10.3387 0.0027 22 1 -0.4850 0.8400 0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1246 -3.7313 -0.8905 25 1 1.3706 -5.4846 -0.8896 26 1 1.3711 -5.4840 0.8903 27 1 3.7601 -6.1471 0.8907 28 1 3.7602 -6.1480 -0.8892 29 1 5.0673 -10.7019 0.0105 30 1 3.8802 -12.8701 -1.0072 31 1 4.3845 -12.9852 0.6934 32 1 1.9978 -13.7476 0.2244 33 1 2.1483 -12.4798 1.4697 34 1 0.3266 -12.0360 -0.2378 35 1 1.6019 -11.9058 -1.4776 36 1 1.2366 -10.1765 1.0044 37 1 1.1408 -9.6633 -0.6960 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805533883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:00 Heat of formation + Delta-G solvation = -107.333980 kcal Electronic energy + Delta-G solvation = -17463.095220 eV Core-core repulsion = 14523.626825 eV Total energy + Delta-G solvation = -2939.468394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58889 -38.43523 -36.59760 -33.50340 -32.44500 -31.72444 -31.13499 -26.74002 -25.50504 -24.16243 -23.31863 -21.39027 -21.21243 -18.38677 -17.63460 -17.36973 -16.89096 -16.56566 -15.10866 -14.82263 -14.70145 -14.49582 -14.18268 -14.01270 -13.61210 -13.24635 -12.93675 -12.78377 -12.56300 -12.52460 -12.08227 -11.34823 -11.21980 -11.17841 -11.14194 -10.98125 -10.87753 -10.79727 -10.66831 -10.37546 -10.26209 -9.62264 -9.42299 -9.08504 -8.35119 -6.56356 -6.24933 -3.95802 0.97173 2.62630 2.81968 3.20576 3.22592 3.29810 3.55144 4.19809 4.30740 4.34941 4.53444 4.72526 4.85375 4.94694 5.10866 5.14053 5.15189 5.20847 5.21326 5.35887 5.38390 5.50106 5.51646 5.62334 5.66634 5.74561 5.78787 5.90071 5.95988 6.07991 6.17288 6.29937 6.46069 6.46269 6.68387 7.59427 7.72257 8.35160 9.21621 10.83317 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.054573 B = 0.002665 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.950548 B =10504.430788 C =10953.321991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.074 0.926 9 S -0.125 6.125 10 C -0.114 4.114 11 C -0.097 4.097 12 C 0.072 3.928 13 O -0.349 6.349 14 C 0.495 3.505 15 O -0.517 6.517 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.096 4.096 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.079 4.079 22 H 0.267 0.733 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 -24.888 -0.032 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.665 4.665 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.265 6.265 14 C 0.341 3.659 15 O -0.407 6.407 16 C -0.151 4.151 17 C -0.086 4.086 18 C -0.132 4.132 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.116 4.116 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.410 -24.817 -0.032 25.050 hybrid contribution 2.109 1.543 0.009 2.614 sum 5.520 -23.274 -0.023 23.920 Atomic orbital electron populations 1.70027 1.05924 1.27299 1.47252 1.25024 0.95105 0.99146 0.94551 0.86090 0.79651 0.81746 0.77898 1.19586 1.20543 1.20539 1.22738 0.94621 0.90655 1.58509 0.90796 1.84650 1.08846 0.99266 1.96873 1.23180 1.03403 0.96365 1.03334 1.21276 0.96438 0.91548 1.04299 1.23269 0.97765 0.76688 1.02546 1.86568 1.39643 1.16805 1.83491 1.21556 0.84229 0.87335 0.72779 1.90838 1.18221 1.85183 1.46490 1.20171 0.97448 0.88966 1.08510 1.23001 0.99754 0.94740 0.91109 1.20612 0.97719 0.92107 1.02797 1.21613 0.94205 0.99851 1.00552 1.21575 0.99981 0.94185 1.00116 1.20350 0.90845 0.97240 1.03162 0.92305 0.91746 0.91738 0.90349 0.90349 0.91204 0.91199 0.85746 0.89507 0.89851 0.91203 0.91342 0.91008 0.91507 0.90091 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.85 9.50 30.94 0.29 -14.56 16 8 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 9 S -0.12 -3.26 21.44 -107.50 -2.30 -5.56 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 C -0.10 -1.62 5.60 -26.73 -0.15 -1.77 16 12 C 0.07 1.10 5.48 37.16 0.20 1.30 16 13 O -0.35 -5.09 9.54 -40.76 -0.39 -5.48 16 14 C 0.50 6.98 7.84 34.26 0.27 7.25 16 15 O -0.52 -8.54 15.75 -19.29 -0.30 -8.84 16 16 C -0.15 -1.60 5.79 -103.26 -0.60 -2.19 16 17 C -0.07 -0.60 9.42 -36.47 -0.34 -0.95 16 18 C -0.10 -0.56 6.11 -28.17 -0.17 -0.73 16 19 C -0.12 -0.70 5.99 -26.70 -0.16 -0.86 16 20 C -0.12 -0.79 5.97 -26.70 -0.16 -0.94 16 21 C -0.08 -0.69 5.45 -28.18 -0.15 -0.84 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 24 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.12 1.21 7.17 -52.49 -0.38 0.83 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -32.25 326.13 -9.05 -41.30 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.83 Total: -3.20 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.85 Total: -14.48 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.73 Total: -25.23 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.69 Total: -14.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.25 -9.05 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805533883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.032 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds