Wall clock time and date at job start Mon Mar 30 2020 01:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48503 * 109.46797 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47294 * 299.99950 * 3 2 1 6 6 H 1.48495 * 109.47318 * 60.00152 * 3 2 1 7 7 C 1.38795 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99855 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00041 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47331 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47432 * 179.97438 * 12 11 10 14 14 C 1.34797 * 117.00102 * 179.97438 * 13 12 11 15 15 O 1.21535 * 120.00219 * 0.02562 * 14 13 12 16 16 C 1.46954 * 119.99877 * 180.02562 * 14 13 12 17 17 C 1.31653 * 118.10975 * 180.02562 * 16 14 13 18 18 C 1.50088 * 123.77882 * 180.39751 * 17 16 14 19 19 C 1.53014 * 110.13323 * 342.85018 * 18 17 16 20 20 C 1.53055 * 108.46937 * 49.72883 * 19 18 17 21 21 C 1.50093 * 118.11137 * 0.02562 * 16 14 13 22 22 H 0.96997 * 120.00341 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46943 * 60.00181 * 10 9 7 24 24 H 1.09000 * 109.47390 * 300.00211 * 10 9 7 25 25 H 1.08994 * 109.47119 * 59.99783 * 11 10 9 26 26 H 1.09001 * 109.47353 * 299.99887 * 11 10 9 27 27 H 1.09006 * 109.47157 * 59.99516 * 12 11 10 28 28 H 1.09000 * 109.46996 * 300.00040 * 12 11 10 29 29 H 1.08001 * 118.10439 * 0.42167 * 17 16 14 30 30 H 1.09002 * 109.36364 * 103.05155 * 18 17 16 31 31 H 1.09003 * 109.36024 * 222.64810 * 18 17 16 32 32 H 1.09003 * 109.62613 * 169.47044 * 19 18 17 33 33 H 1.09002 * 109.62830 * 290.05265 * 19 18 17 34 34 H 1.08995 * 109.46435 * 172.19182 * 20 19 18 35 35 H 1.09004 * 109.66002 * 51.69236 * 20 19 18 36 36 H 1.09002 * 109.36216 * 283.03499 * 21 16 14 37 37 H 1.08998 * 109.36150 * 42.76529 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1515 -6.3077 0.0008 13 8 2.6424 -7.6674 0.0020 14 6 3.5526 -8.6617 0.0021 15 8 4.7392 -8.3993 0.0017 16 6 3.1100 -10.0630 0.0028 17 6 4.0305 -11.0042 0.0034 18 6 3.7221 -12.4731 -0.0045 19 6 2.2682 -12.7082 0.4106 20 6 1.3718 -11.7858 -0.4189 21 6 1.6346 -10.3387 0.0027 22 1 -0.4850 0.8400 0.0004 23 1 3.1245 -3.7313 0.8895 24 1 3.1246 -3.7313 -0.8905 25 1 1.3706 -5.4846 -0.8896 26 1 1.3711 -5.4840 0.8903 27 1 3.7601 -6.1471 0.8907 28 1 3.7602 -6.1480 -0.8892 29 1 5.0673 -10.7019 0.0105 30 1 3.8802 -12.8701 -1.0072 31 1 4.3845 -12.9852 0.6934 32 1 1.9978 -13.7476 0.2244 33 1 2.1483 -12.4798 1.4697 34 1 0.3266 -12.0360 -0.2378 35 1 1.6019 -11.9058 -1.4776 36 1 1.2366 -10.1765 1.0044 37 1 1.1408 -9.6633 -0.6960 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805533883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:59 Heat of formation + Delta-G solvation = -124.255099 kcal Electronic energy + Delta-G solvation = -17463.828975 eV Core-core repulsion = 14523.626825 eV Total energy + Delta-G solvation = -2940.202149 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66554 -39.16152 -37.75282 -34.94279 -34.59921 -32.42485 -31.73056 -28.27324 -27.50953 -24.96846 -24.04741 -22.74941 -22.05900 -19.66928 -19.14060 -18.45806 -17.92376 -17.76043 -16.91529 -16.28700 -16.08030 -15.53593 -15.17882 -14.72037 -14.63731 -14.42363 -14.17238 -13.91223 -13.75153 -13.29176 -13.22951 -13.14538 -12.97285 -12.63155 -12.43013 -12.42445 -12.04242 -11.65137 -11.56767 -11.55532 -11.34539 -11.17413 -11.17061 -10.38271 -10.14901 -8.70069 -8.39693 -6.16441 0.09307 1.26429 1.37815 1.42588 1.52991 1.83400 1.85291 2.25366 2.94872 3.26105 3.49497 3.71692 3.80459 3.94378 4.06686 4.08244 4.11148 4.23447 4.28675 4.31472 4.50588 4.63907 4.64942 4.66741 4.86953 4.97935 4.99345 5.05196 5.08031 5.16877 5.26429 5.37329 5.38830 5.42146 5.49060 5.61917 6.16574 6.61102 7.02864 8.69998 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.054573 B = 0.002665 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.950548 B =10504.430788 C =10953.321991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.073 0.927 9 S -0.184 6.184 10 C -0.092 4.092 11 C -0.084 4.084 12 C 0.080 3.920 13 O -0.351 6.351 14 C 0.491 3.509 15 O -0.549 6.549 16 C -0.174 4.174 17 C -0.045 4.045 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.077 4.077 22 H 0.272 0.728 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -26.382 -0.058 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.241 4.241 11 C -0.123 4.123 12 C 0.004 3.996 13 O -0.267 6.267 14 C 0.340 3.660 15 O -0.441 6.441 16 C -0.175 4.175 17 C -0.064 4.064 18 C -0.131 4.131 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.114 4.114 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.245 -26.331 -0.058 26.671 hybrid contribution 1.893 1.875 0.016 2.664 sum 6.138 -24.456 -0.042 25.214 Atomic orbital electron populations 1.70149 1.07641 1.28595 1.47904 1.26073 0.96067 1.03124 0.93707 0.84948 0.78364 0.76593 0.78348 1.18769 1.19605 1.19595 1.23078 0.94815 0.91898 1.58958 0.90839 1.84625 1.13013 1.00830 1.97057 1.23064 1.00832 0.96518 1.03642 1.21091 0.96911 0.89794 1.04488 1.23034 0.96728 0.77022 1.02800 1.86563 1.39936 1.16594 1.83641 1.22275 0.83759 0.88312 0.71695 1.90816 1.19316 1.85654 1.48357 1.20253 0.98831 0.87090 1.11342 1.23316 0.98888 0.96396 0.87779 1.20756 0.98459 0.89606 1.04313 1.21635 0.93576 1.00719 1.00136 1.21583 1.00976 0.92641 1.00388 1.20351 0.89397 0.98775 1.02877 0.91863 0.91373 0.91359 0.90189 0.90202 0.91000 0.90984 0.86740 0.87730 0.87962 0.89151 0.91646 0.89922 0.91270 0.90276 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.71 13.22 21.65 0.29 -54.43 16 2 C 0.02 0.88 5.49 84.86 0.47 1.34 16 3 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 9 S -0.18 -9.80 21.44 -56.49 -1.21 -11.01 16 10 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 11 C -0.08 -2.79 5.60 30.59 0.17 -2.62 16 12 C 0.08 2.38 5.48 71.98 0.39 2.77 16 13 O -0.35 -10.22 9.54 -57.08 -0.54 -10.76 16 14 C 0.49 13.85 7.84 70.11 0.55 14.40 16 15 O -0.55 -18.24 15.75 19.72 0.31 -17.93 16 16 C -0.17 -3.58 5.79 -18.42 -0.11 -3.69 16 17 C -0.05 -0.74 9.42 24.84 0.23 -0.50 16 18 C -0.10 -0.82 6.11 29.66 0.18 -0.64 16 19 C -0.12 -1.01 5.99 30.62 0.18 -0.83 16 20 C -0.12 -1.28 5.97 30.61 0.18 -1.10 16 21 C -0.08 -1.28 5.45 29.66 0.16 -1.12 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.07 2.70 8.14 -2.40 -0.02 2.68 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.11 2.12 7.17 -2.91 -0.02 2.09 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.60 8.12 -2.39 -0.02 0.58 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.73 8.12 -2.38 -0.02 0.71 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.36 7.93 -2.39 -0.02 1.34 16 Total: -1.00 -69.87 326.13 5.38 -64.50 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.03 Total: 9.41 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.47 Total: -25.94 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.29 Total: -54.43 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.23 Total: -28.69 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -1.21 Total: -11.01 kcal Total: -69.87 5.38 -64.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805533883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.757 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds