Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00032 * 2 1 4 4 H 1.48495 * 109.46893 * 269.99523 * 3 2 1 5 5 H 1.48501 * 109.46895 * 29.99762 * 3 2 1 6 6 H 1.48498 * 109.47122 * 149.99584 * 3 2 1 7 7 C 1.37878 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00663 * 159.55847 * 7 2 1 9 9 C 1.50700 * 119.99814 * 339.55936 * 7 2 1 10 10 C 1.53007 * 115.54885 * 324.63352 * 9 7 2 11 11 O 1.45198 * 109.46989 * 305.89806 * 10 9 7 12 12 C 1.34234 * 116.99954 * 181.97127 * 11 10 9 13 13 O 1.20830 * 119.99783 * 4.20552 * 12 11 10 14 14 C 1.50699 * 120.00090 * 184.20388 * 12 11 10 15 15 H 1.09004 * 109.38853 * 35.62090 * 14 12 11 16 16 C 1.52578 * 109.38949 * 155.42245 * 14 12 11 17 17 C 1.52578 * 110.72571 * 190.72706 * 16 14 12 18 18 C 1.53102 * 109.95429 * 289.32285 * 17 16 14 19 19 S 1.81739 * 108.83898 * 63.02850 * 18 17 16 20 20 C 1.53095 * 109.30962 * 275.86654 * 14 12 11 21 21 C 1.52995 * 117.50111 * 110.30191 * 9 7 2 22 22 C 1.53000 * 117.49991 * 178.96434 * 9 7 2 23 23 H 0.97003 * 120.00276 * 5.06237 * 1 2 3 24 24 H 1.08999 * 109.46777 * 185.89810 * 10 9 7 25 25 H 1.08998 * 109.47058 * 65.90336 * 10 9 7 26 26 H 1.09007 * 109.22760 * 311.04682 * 16 14 12 27 27 H 1.08995 * 109.22747 * 70.44326 * 16 14 12 28 28 H 1.08995 * 109.39271 * 49.47365 * 17 16 14 29 29 H 1.08998 * 109.38938 * 169.17699 * 17 16 14 30 30 H 1.09005 * 109.57399 * 182.83249 * 18 17 16 31 31 H 1.08998 * 109.57590 * 303.21593 * 18 17 16 32 32 H 1.08996 * 109.57639 * 296.68704 * 20 14 12 33 33 H 1.09008 * 109.57375 * 57.07034 * 20 14 12 34 34 H 1.09002 * 117.50545 * 214.99995 * 21 9 7 35 35 H 1.09003 * 117.50123 * 0.02963 * 21 9 7 36 36 H 1.09000 * 117.49972 * 359.97363 * 22 9 7 37 37 H 1.09000 * 117.50147 * 144.99598 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0335 -1.2237 -0.3261 9 6 1.3223 -2.4578 0.4569 10 6 0.3209 -2.2907 1.6017 11 8 0.9678 -1.6226 2.7168 12 6 0.2326 -1.4347 3.8241 13 8 -0.8878 -1.8825 3.8886 14 6 0.8047 -0.6653 4.9867 15 1 1.4373 0.1395 4.6120 16 6 -0.3340 -0.0724 5.8112 17 6 0.2023 0.9245 6.8343 18 6 0.9635 0.1834 7.9366 19 16 2.4010 -0.6491 7.1993 20 6 1.6423 -1.6080 5.8547 21 6 1.0124 -3.5160 -0.6038 22 6 2.1331 -3.7545 0.4112 23 1 -0.4851 0.8368 -0.0741 24 1 -0.0327 -3.2711 1.9210 25 1 -0.5244 -1.6930 1.2607 26 1 -1.0318 0.4364 5.1460 27 1 -0.8556 -0.8751 6.3323 28 1 0.8741 1.6254 6.3389 29 1 -0.6298 1.4734 7.2753 30 1 1.3006 0.8956 8.6899 31 1 0.3096 -0.5567 8.3978 32 1 1.0017 -2.3831 6.2752 33 1 2.4230 -2.0665 5.2475 34 1 0.0953 -4.0932 -0.4862 35 1 1.3025 -3.2983 -1.6317 36 1 3.1600 -3.6935 0.0507 37 1 1.9533 -4.4885 1.1967 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810598739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -75.230547 kcal Electronic energy + Delta-G solvation = -19179.160497 eV Core-core repulsion = 16241.084212 eV Total energy + Delta-G solvation = -2938.076285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94259 -37.22800 -36.24126 -35.06087 -32.19945 -31.93505 -27.38163 -26.87609 -25.43746 -23.96675 -21.63133 -21.21486 -19.64216 -19.21930 -17.42366 -16.78244 -16.23316 -15.84844 -15.16022 -14.90413 -14.63784 -14.48725 -13.85599 -13.57883 -13.28573 -13.16293 -12.86529 -12.18211 -11.96695 -11.69953 -11.55971 -11.48608 -11.06078 -10.98720 -10.95970 -10.86133 -10.51529 -10.35747 -10.07981 -9.76746 -9.61165 -9.35881 -9.24225 -8.75247 -8.09546 -7.79317 -6.14169 -4.08472 1.61689 2.30603 2.81441 3.24760 3.33347 3.40286 3.46162 4.34936 4.53575 4.61134 4.66950 4.79768 4.91079 5.05933 5.23810 5.31398 5.42698 5.51737 5.56349 5.58460 5.78333 5.82047 5.97316 6.00739 6.14782 6.16828 6.39852 6.55392 6.62296 6.76729 6.93771 7.23646 7.29630 7.43285 7.84959 8.31773 8.51369 8.83205 9.47986 10.90850 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.006123 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.892892 B = 4571.526608 C = 5127.886633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.079 3.921 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.489 4.489 8 H 0.064 0.936 9 C 0.048 3.952 10 C 0.114 3.886 11 O -0.324 6.324 12 C 0.462 3.538 13 O -0.523 6.523 14 C -0.082 4.082 15 H 0.115 0.885 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.085 4.085 19 S -0.254 6.254 20 C -0.070 4.070 21 C -0.191 4.191 22 C -0.209 4.209 23 H 0.263 0.737 24 H 0.031 0.969 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 0.457 13.168 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.048 3.952 10 C 0.041 3.959 11 O -0.238 6.238 12 C 0.303 3.697 13 O -0.414 6.414 14 C -0.103 4.103 15 H 0.133 0.867 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.234 4.234 19 S -0.026 6.026 20 C -0.219 4.219 21 C -0.229 4.229 22 C -0.246 4.246 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.123 0.877 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.156 0.489 13.541 13.599 hybrid contribution -0.974 0.622 -0.545 1.278 sum 0.181 1.111 12.996 13.044 Atomic orbital electron populations 1.69912 1.06311 1.27142 1.47909 1.24908 0.94566 0.99178 0.93836 0.86671 0.80566 0.83171 0.78232 1.20699 1.21007 1.19335 1.20330 0.97871 0.89971 1.44372 0.91834 1.18857 0.95081 0.89053 0.92216 1.22754 0.97257 0.93885 0.81993 1.86519 1.44259 1.70548 1.22470 1.23253 0.84194 0.77955 0.84325 1.90588 1.20380 1.47967 1.82469 1.21195 0.98565 0.98494 0.92078 0.86705 1.21416 0.96800 0.99276 0.97709 1.21742 1.00493 0.98167 0.95547 1.23510 0.97590 1.01945 1.00324 1.86907 1.16963 1.59621 1.39152 1.23374 1.02590 0.98848 0.97048 1.22968 0.97668 1.06094 0.96208 1.22964 0.96262 1.02970 1.02392 0.92688 0.95030 0.87705 0.90090 0.90695 0.90177 0.90277 0.87699 0.89740 0.89194 0.86411 0.91553 0.89720 0.90244 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.19 11.26 55.43 0.62 -23.57 16 2 C 0.08 2.12 5.05 -17.82 -0.09 2.03 16 3 Si 0.89 20.72 29.59 -169.99 -5.03 15.69 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.49 -13.17 8.72 -34.44 -0.30 -13.47 16 8 H 0.06 1.71 7.90 -52.49 -0.41 1.29 16 9 C 0.05 1.20 2.08 -155.66 -0.32 0.88 16 10 C 0.11 2.77 4.69 37.16 0.17 2.95 16 11 O -0.32 -7.47 9.89 -39.27 -0.39 -7.86 16 12 C 0.46 9.26 7.02 36.00 0.25 9.51 16 13 O -0.52 -11.49 15.96 -18.75 -0.30 -11.79 16 14 C -0.08 -1.26 2.48 -91.94 -0.23 -1.49 16 15 H 0.11 1.79 8.06 -51.93 -0.42 1.37 16 16 C -0.11 -1.49 4.31 -27.16 -0.12 -1.61 16 17 C -0.12 -1.22 5.75 -26.89 -0.15 -1.37 16 18 C -0.09 -0.81 6.45 37.21 0.24 -0.57 16 19 S -0.25 -3.11 22.33 -107.50 -2.40 -5.52 16 20 C -0.07 -0.94 5.71 37.21 0.21 -0.73 16 21 C -0.19 -4.28 9.96 -26.70 -0.27 -4.55 16 22 C -0.21 -4.50 9.92 -26.69 -0.26 -4.76 16 23 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 24 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 25 H 0.11 2.82 6.25 -51.93 -0.32 2.49 16 26 H 0.08 1.15 8.08 -51.92 -0.42 0.73 16 27 H 0.07 0.96 8.08 -51.93 -0.42 0.55 16 28 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 1.62 8.14 -51.92 -0.42 1.20 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -28.97 318.50 -9.33 -38.30 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.77 Total: 3.13 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.86 Total: -13.18 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.62 Total: -23.57 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.69 Total: -19.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.40 Total: -5.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.97 -9.33 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810598739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.930 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds