Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00032 * 2 1 4 4 H 1.48495 * 109.46893 * 269.99523 * 3 2 1 5 5 H 1.48501 * 109.46895 * 29.99762 * 3 2 1 6 6 H 1.48498 * 109.47122 * 149.99584 * 3 2 1 7 7 C 1.37878 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00663 * 159.55847 * 7 2 1 9 9 C 1.50700 * 119.99814 * 339.55936 * 7 2 1 10 10 C 1.53007 * 115.54885 * 324.63352 * 9 7 2 11 11 O 1.45198 * 109.46989 * 305.89806 * 10 9 7 12 12 C 1.34234 * 116.99954 * 181.97127 * 11 10 9 13 13 O 1.20830 * 119.99783 * 4.20552 * 12 11 10 14 14 C 1.50699 * 120.00090 * 184.20388 * 12 11 10 15 15 H 1.09004 * 109.38853 * 35.62090 * 14 12 11 16 16 C 1.52578 * 109.38949 * 155.42245 * 14 12 11 17 17 C 1.52578 * 110.72571 * 190.72706 * 16 14 12 18 18 C 1.53102 * 109.95429 * 289.32285 * 17 16 14 19 19 S 1.81739 * 108.83898 * 63.02850 * 18 17 16 20 20 C 1.53095 * 109.30962 * 275.86654 * 14 12 11 21 21 C 1.52995 * 117.50111 * 110.30191 * 9 7 2 22 22 C 1.53000 * 117.49991 * 178.96434 * 9 7 2 23 23 H 0.97003 * 120.00276 * 5.06237 * 1 2 3 24 24 H 1.08999 * 109.46777 * 185.89810 * 10 9 7 25 25 H 1.08998 * 109.47058 * 65.90336 * 10 9 7 26 26 H 1.09007 * 109.22760 * 311.04682 * 16 14 12 27 27 H 1.08995 * 109.22747 * 70.44326 * 16 14 12 28 28 H 1.08995 * 109.39271 * 49.47365 * 17 16 14 29 29 H 1.08998 * 109.38938 * 169.17699 * 17 16 14 30 30 H 1.09005 * 109.57399 * 182.83249 * 18 17 16 31 31 H 1.08998 * 109.57590 * 303.21593 * 18 17 16 32 32 H 1.08996 * 109.57639 * 296.68704 * 20 14 12 33 33 H 1.09008 * 109.57375 * 57.07034 * 20 14 12 34 34 H 1.09002 * 117.50545 * 214.99995 * 21 9 7 35 35 H 1.09003 * 117.50123 * 0.02963 * 21 9 7 36 36 H 1.09000 * 117.49972 * 359.97363 * 22 9 7 37 37 H 1.09000 * 117.50147 * 144.99598 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0335 -1.2237 -0.3261 9 6 1.3223 -2.4578 0.4569 10 6 0.3209 -2.2907 1.6017 11 8 0.9678 -1.6226 2.7168 12 6 0.2326 -1.4347 3.8241 13 8 -0.8878 -1.8825 3.8886 14 6 0.8047 -0.6653 4.9867 15 1 1.4373 0.1395 4.6120 16 6 -0.3340 -0.0724 5.8112 17 6 0.2023 0.9245 6.8343 18 6 0.9635 0.1834 7.9366 19 16 2.4010 -0.6491 7.1993 20 6 1.6423 -1.6080 5.8547 21 6 1.0124 -3.5160 -0.6038 22 6 2.1331 -3.7545 0.4112 23 1 -0.4851 0.8368 -0.0741 24 1 -0.0327 -3.2711 1.9210 25 1 -0.5244 -1.6930 1.2607 26 1 -1.0318 0.4364 5.1460 27 1 -0.8556 -0.8751 6.3323 28 1 0.8741 1.6254 6.3389 29 1 -0.6298 1.4734 7.2753 30 1 1.3006 0.8956 8.6899 31 1 0.3096 -0.5567 8.3978 32 1 1.0017 -2.3831 6.2752 33 1 2.4230 -2.0665 5.2475 34 1 0.0953 -4.0932 -0.4862 35 1 1.3025 -3.2983 -1.6317 36 1 3.1600 -3.6935 0.0507 37 1 1.9533 -4.4885 1.1967 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810598739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -88.927552 kcal Electronic energy + Delta-G solvation = -19179.754444 eV Core-core repulsion = 16241.084212 eV Total energy + Delta-G solvation = -2938.670232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.56424 -38.85041 -37.61036 -36.76648 -34.21792 -32.96049 -28.67388 -28.35705 -27.43328 -25.24395 -23.05301 -22.64282 -21.16241 -20.99928 -18.82529 -18.59740 -17.69820 -17.38509 -16.72869 -16.50879 -16.03141 -15.61518 -15.47278 -14.94815 -14.55166 -14.24059 -14.06848 -13.84121 -13.71976 -13.44122 -12.86836 -12.82387 -12.63947 -12.53955 -12.32616 -12.16258 -12.11634 -12.01723 -11.64741 -11.46922 -11.20062 -11.14224 -10.70918 -10.62915 -10.04311 -8.75180 -8.16239 -6.16142 0.63949 1.14223 1.38377 1.42983 1.44805 1.54062 1.96810 2.40593 2.96500 3.43123 3.50534 3.53360 3.70578 3.83875 4.02011 4.08762 4.15975 4.31487 4.33067 4.46283 4.53483 4.54380 4.69484 4.73642 4.77236 4.89263 4.91726 4.98518 4.99208 5.15557 5.21709 5.34019 5.50247 5.71775 5.78918 6.32728 6.74383 6.86409 7.42225 8.87819 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.006123 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.892892 B = 4571.526608 C = 5127.886633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.009 3.991 10 C 0.124 3.876 11 O -0.340 6.340 12 C 0.457 3.543 13 O -0.546 6.546 14 C -0.075 4.075 15 H 0.111 0.889 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.077 4.077 19 S -0.269 6.269 20 C -0.066 4.066 21 C -0.186 4.186 22 C -0.185 4.185 23 H 0.262 0.738 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 0.934 14.883 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.008 3.992 10 C 0.051 3.949 11 O -0.255 6.255 12 C 0.300 3.700 13 O -0.438 6.438 14 C -0.096 4.096 15 H 0.129 0.871 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.224 4.224 19 S -0.042 6.042 20 C -0.214 4.214 21 C -0.224 4.224 22 C -0.222 4.222 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.747 0.960 15.260 15.390 hybrid contribution -1.180 0.446 -1.056 1.645 sum 0.567 1.406 14.204 14.285 Atomic orbital electron populations 1.70026 1.07411 1.27564 1.48944 1.25539 0.95201 1.01896 0.93694 0.85823 0.79446 0.79764 0.78394 1.20092 1.20708 1.18998 1.20559 0.97656 0.91440 1.44605 0.92569 1.19007 0.96932 0.89694 0.93532 1.22441 0.96302 0.93579 0.82572 1.86527 1.44978 1.70868 1.23087 1.24242 0.83884 0.77503 0.84409 1.90562 1.21362 1.49051 1.82786 1.21335 0.99482 0.98069 0.90697 0.87119 1.21448 0.95707 0.99918 0.97876 1.21715 1.01361 0.97315 0.94840 1.23637 0.96233 1.02358 1.00217 1.86998 1.18887 1.59927 1.38344 1.23262 1.02162 0.98765 0.97256 1.22959 0.98767 1.04950 0.95747 1.22980 0.96179 1.00953 1.02064 0.92853 0.94287 0.90857 0.91656 0.90424 0.90467 0.87607 0.85255 0.88429 0.88543 0.87208 0.90174 0.90123 0.89620 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.81 11.26 21.45 0.24 -50.57 16 2 C 0.04 2.05 5.05 84.66 0.43 2.48 16 3 Si 0.94 42.68 29.59 68.60 2.03 44.71 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.51 -27.49 8.72 25.60 0.22 -27.27 16 8 H 0.06 3.04 7.90 -2.91 -0.02 3.02 16 9 C 0.01 0.44 2.08 -52.93 -0.11 0.33 16 10 C 0.12 6.16 4.69 71.98 0.34 6.50 16 11 O -0.34 -15.97 9.89 -51.46 -0.51 -16.48 16 12 C 0.46 18.57 7.02 71.24 0.50 19.07 16 13 O -0.55 -24.36 15.96 21.95 0.35 -24.01 16 14 C -0.07 -2.26 2.48 -11.65 -0.03 -2.29 16 15 H 0.11 3.42 8.06 -2.38 -0.02 3.40 16 16 C -0.11 -2.77 4.31 30.31 0.13 -2.64 16 17 C -0.11 -1.97 5.75 30.49 0.18 -1.80 16 18 C -0.08 -1.20 6.45 72.02 0.46 -0.73 16 19 S -0.27 -6.06 22.33 -56.49 -1.26 -7.32 16 20 C -0.07 -1.71 5.71 72.01 0.41 -1.30 16 21 C -0.19 -8.22 9.96 30.62 0.30 -7.92 16 22 C -0.18 -7.72 9.92 30.62 0.30 -7.41 16 23 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 24 H 0.04 1.81 8.00 -2.39 -0.02 1.79 16 25 H 0.07 4.08 6.25 -2.39 -0.01 4.06 16 26 H 0.06 1.82 8.08 -2.38 -0.02 1.80 16 27 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 28 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 34 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -62.37 318.50 5.03 -57.34 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 1.04 Total: 19.30 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 3.14 Total: -22.98 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.24 Total: -50.57 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.16 Total: -40.48 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -1.26 Total: -7.32 kcal Total: -62.37 5.03 -57.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810598739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.586 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds