Wall clock time and date at job start Mon Mar 30 2020 01:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48491 * 109.47292 * 269.99387 * 3 2 1 5 5 H 1.48499 * 109.47439 * 29.99996 * 3 2 1 6 6 H 1.48504 * 109.46908 * 149.99747 * 3 2 1 7 7 C 1.37877 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99930 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99984 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47085 * 180.02562 * 10 9 7 12 12 O 1.20833 * 120.00030 * 0.02562 * 11 10 9 13 13 O 1.34271 * 120.00265 * 179.97438 * 11 10 9 14 14 C 1.35831 * 117.00008 * 185.54091 * 13 11 10 15 15 C 1.36667 * 120.22834 * 261.90985 * 14 13 11 16 16 C 1.39188 * 120.92239 * 179.97438 * 15 14 13 17 17 C 1.36179 * 121.06075 * 0.06357 * 16 15 14 18 18 C 1.40528 * 119.76627 * 359.96162 * 17 16 15 19 19 C 1.40555 * 121.27473 * 180.02562 * 18 17 16 20 20 C 1.36101 * 119.65046 * 179.97438 * 19 18 17 21 21 C 1.39360 * 120.97796 * 0.02562 * 20 19 18 22 22 C 1.36133 * 120.97456 * 359.97438 * 21 20 19 23 23 C 1.40407 * 119.66791 * 359.97438 * 22 21 20 24 24 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46654 * 59.99548 * 9 7 2 26 26 H 1.08997 * 109.46938 * 299.99848 * 9 7 2 27 27 H 1.08997 * 109.47314 * 59.99660 * 10 9 7 28 28 H 1.09002 * 109.47520 * 300.00154 * 10 9 7 29 29 H 1.07994 * 119.53993 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.47167 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.12030 * 180.23099 * 17 16 15 32 32 H 1.08000 * 120.17218 * 359.95527 * 19 18 17 33 33 H 1.07995 * 119.50826 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.50770 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.16222 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0213 -2.6367 0.0023 11 6 5.5283 -2.6368 0.0035 12 8 6.1326 -1.5904 0.0039 13 8 6.1997 -3.7996 0.0052 14 6 7.5511 -3.7313 0.1231 15 6 8.3434 -3.8071 -0.9879 16 6 9.7297 -3.7382 -0.8839 17 6 10.3372 -3.5945 0.3264 18 6 9.5578 -3.5132 1.4929 19 6 10.1515 -3.3642 2.7582 20 6 9.3649 -3.2884 3.8663 21 6 7.9766 -3.3568 3.7665 22 6 7.3673 -3.5009 2.5576 23 6 8.1461 -3.5816 1.3921 24 1 -0.4850 0.8401 -0.0004 25 1 3.8744 -0.6801 0.8911 26 1 3.8752 -0.6806 -0.8888 27 1 3.6583 -3.1511 -0.8874 28 1 3.6576 -3.1500 0.8925 29 1 7.8875 -3.9222 -1.9602 30 1 10.3333 -3.8002 -1.7773 31 1 11.4139 -3.5389 0.3891 32 1 11.2262 -3.3106 2.8506 33 1 9.8235 -3.1735 4.8373 34 1 7.3752 -3.2945 4.6614 35 1 6.2903 -3.5529 2.4955 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812822385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:27 Heat of formation + Delta-G solvation = -59.002820 kcal Electronic energy + Delta-G solvation = -19510.342386 eV Core-core repulsion = 16437.525836 eV Total energy + Delta-G solvation = -3072.816549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.60645 -40.79774 -38.43718 -37.14959 -35.69602 -33.60650 -33.07042 -31.39101 -30.14795 -28.45973 -25.09058 -24.17026 -24.03974 -22.65920 -21.47541 -19.55597 -19.04901 -18.74987 -17.97488 -17.70807 -16.87968 -16.78995 -16.31416 -15.56470 -15.26232 -14.97689 -14.84394 -14.73470 -14.45554 -14.31915 -13.78502 -13.49593 -13.09571 -13.01485 -12.76287 -12.38757 -12.30402 -12.08864 -12.06488 -11.86465 -11.73949 -11.61817 -11.46930 -10.87432 -10.81824 -9.69722 -8.89017 -8.34728 -6.39197 -0.64201 -0.05913 0.79007 1.02861 1.31484 1.33849 1.47235 1.68694 2.07839 2.31605 3.00573 3.05096 3.57824 3.62584 3.81159 3.89754 4.02602 4.18288 4.21546 4.29441 4.31853 4.36795 4.53174 4.58116 4.79505 4.86025 4.98995 5.09073 5.18960 5.19869 5.28547 5.29104 5.37694 5.49601 5.52981 5.54033 5.78302 5.97129 6.18019 6.65757 6.75838 7.26091 8.80806 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.004425 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.545167 B = 6326.115862 C = 6707.805695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.019 3.981 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.004 3.996 10 C -0.088 4.088 11 C 0.463 3.537 12 O -0.523 6.523 13 O -0.295 6.295 14 C 0.053 3.947 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.093 4.093 18 C -0.066 4.066 19 C -0.100 4.100 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.138 4.138 23 C -0.080 4.080 24 H 0.269 0.731 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.722 -9.432 4.035 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.072 0.928 9 C -0.034 4.034 10 C -0.125 4.125 11 C 0.309 3.691 12 O -0.410 6.410 13 O -0.210 6.210 14 C 0.012 3.988 15 C -0.138 4.138 16 C -0.130 4.130 17 C -0.110 4.110 18 C -0.066 4.066 19 C -0.118 4.118 20 C -0.137 4.137 21 C -0.128 4.128 22 C -0.156 4.156 23 C -0.080 4.080 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.156 0.844 30 H 0.184 0.816 31 H 0.190 0.810 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 24.755 -8.997 4.020 26.644 hybrid contribution -0.659 0.815 -0.155 1.059 sum 24.096 -8.182 3.865 25.739 Atomic orbital electron populations 1.70013 1.07781 1.28257 1.51956 1.25746 0.95461 1.02717 0.94035 0.85866 0.79250 0.79568 0.79287 1.19171 1.20201 1.18574 1.21292 0.90614 0.94043 1.51061 0.92819 1.19320 0.94624 0.92349 0.97105 1.21410 0.83163 1.01117 1.06839 1.24979 0.92414 0.80878 0.70800 1.90632 1.70987 1.33677 1.45676 1.84645 1.18264 1.34706 1.83401 1.18679 0.81048 1.05097 0.94000 1.21295 0.95455 0.99352 0.97718 1.21078 0.92642 0.99374 0.99879 1.21578 1.01562 0.97221 0.90675 1.18395 0.90863 1.00944 0.96418 1.21475 1.01763 0.98269 0.90281 1.21302 0.92931 0.98865 1.00554 1.21222 0.96316 0.97910 0.97364 1.21026 0.99512 1.01869 0.93221 1.18459 0.94858 1.01866 0.92856 0.92193 0.96584 0.96535 0.86264 0.86495 0.84358 0.81606 0.81007 0.81440 0.82303 0.83922 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.02 1.10 5.47 84.65 0.46 1.56 16 3 Si 0.94 45.89 27.47 68.60 1.88 47.78 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -12.71 6.54 99.48 0.65 -12.06 16 7 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 8 H 0.05 3.22 7.99 -2.91 -0.02 3.20 16 9 C 0.00 0.18 3.33 29.85 0.10 0.28 16 10 C -0.09 -3.45 5.75 29.85 0.17 -3.28 16 11 C 0.46 18.09 7.23 71.24 0.52 18.61 16 12 O -0.52 -23.60 15.73 21.94 0.35 -23.25 16 13 O -0.29 -10.31 9.38 5.52 0.05 -10.26 16 14 C 0.05 1.71 4.93 22.57 0.11 1.82 16 15 C -0.12 -3.16 9.88 22.13 0.22 -2.94 16 16 C -0.11 -2.15 9.94 22.02 0.22 -1.93 16 17 C -0.09 -1.67 9.77 22.35 0.22 -1.45 16 18 C -0.07 -1.56 5.74 -21.30 -0.12 -1.68 16 19 C -0.10 -1.77 9.77 22.34 0.22 -1.55 16 20 C -0.12 -2.12 9.95 22.04 0.22 -1.91 16 21 C -0.11 -2.55 9.95 22.05 0.22 -2.33 16 22 C -0.14 -4.14 9.35 22.31 0.21 -3.93 16 23 C -0.08 -2.45 5.74 -21.23 -0.12 -2.57 16 24 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.02 0.81 7.16 -2.39 -0.02 0.79 16 26 H 0.02 0.82 7.53 -2.39 -0.02 0.80 16 27 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 28 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 29 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.11 3.44 7.27 -2.91 -0.02 3.42 16 Total: -1.00 -73.95 306.63 6.50 -67.45 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.03 Total: 7.59 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 2.88 Total: -31.37 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.30 Total: -57.93 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: 0.40 Total: -33.51 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal Total: -73.95 6.50 -67.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812822385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.446 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds