Wall clock time and date at job start Mon Mar 30 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46577 * 2 1 4 4 F 1.39893 * 109.47198 * 60.00582 * 3 2 1 5 5 F 1.39895 * 109.47466 * 300.00095 * 3 2 1 6 6 C 1.50712 * 109.46646 * 180.02562 * 3 2 1 7 7 O 1.21270 * 119.99852 * 25.00027 * 6 3 2 8 8 N 1.34772 * 119.99549 * 205.00444 * 6 3 2 9 9 C 1.39477 * 119.99704 * 185.06673 * 8 6 3 10 10 C 1.38593 * 119.58142 * 185.35896 * 9 8 6 11 11 C 1.40807 * 118.79768 * 179.70225 * 10 9 8 12 12 C 1.41541 * 120.99621 * 180.25772 * 11 10 9 13 13 H 1.08005 * 119.99703 * 153.75839 * 12 11 10 14 14 C 1.40030 * 119.99967 * 333.75181 * 12 11 10 15 15 N 1.30736 * 120.00368 * 350.16087 * 14 12 11 16 16 Si 1.86806 * 119.99754 * 170.15624 * 14 12 11 17 17 H 1.48503 * 109.47115 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46715 * 119.99975 * 16 14 12 19 19 H 1.48497 * 109.47018 * 239.99953 * 16 14 12 20 20 C 1.41173 * 118.00381 * 0.27647 * 11 10 9 21 21 C 1.37588 * 119.01835 * 359.97438 * 20 11 10 22 22 N 1.32076 * 121.10714 * 0.02754 * 21 20 11 23 23 H 1.08998 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47154 * 299.99454 * 1 2 3 25 25 H 1.09002 * 109.47044 * 59.99802 * 1 2 3 26 26 H 1.08999 * 109.46662 * 240.00373 * 2 1 3 27 27 H 1.08992 * 109.47145 * 120.00116 * 2 1 3 28 28 H 0.97002 * 120.00343 * 5.06208 * 8 6 3 29 29 H 1.08005 * 120.59706 * 359.97438 * 10 9 8 30 30 H 0.96996 * 120.00394 * 180.02562 * 15 14 12 31 31 H 1.08002 * 120.49239 * 179.97438 * 20 11 10 32 32 H 1.08004 * 119.44781 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.5737 2.1019 1.1423 5 9 1.5736 2.1021 -1.1422 6 6 3.5470 1.4426 -0.0006 7 8 4.1532 0.4908 -0.4449 8 7 4.2210 2.5003 0.4926 9 6 5.6116 2.5476 0.3964 10 6 6.3047 3.5829 1.0036 11 6 7.7087 3.6110 0.9013 12 6 8.4632 4.6435 1.5080 13 1 9.4880 4.4644 1.7981 14 6 7.8810 5.8972 1.7318 15 7 6.7145 6.1784 1.2128 16 14 8.7712 7.1680 2.7722 17 1 10.0646 6.6074 3.2391 18 1 9.0242 8.3843 1.9586 19 1 7.9325 7.5227 3.9452 20 6 8.3413 2.5787 0.1752 21 6 7.5682 1.5953 -0.3977 22 7 6.2529 1.6051 -0.2784 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.7390 3.2288 0.9145 29 1 5.7776 4.3518 1.5491 30 1 6.3114 7.0469 1.3675 31 1 9.4161 2.5611 0.0710 32 1 8.0448 0.8024 -0.9551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830367543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:59 Heat of formation + Delta-G solvation = -103.675758 kcal Electronic energy + Delta-G solvation = -20389.590525 eV Core-core repulsion = 16792.900033 eV Total energy + Delta-G solvation = -3596.690492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.15981 -47.12578 -39.71731 -37.94299 -34.65808 -33.93323 -33.57524 -30.64441 -29.19607 -27.24172 -26.08724 -23.03936 -22.06122 -21.28122 -20.09545 -18.30475 -17.91800 -17.63600 -16.64085 -15.83489 -15.41068 -14.92380 -14.71331 -14.30767 -14.28537 -13.95842 -13.56189 -13.42950 -13.28517 -13.08014 -12.97754 -12.68102 -12.42650 -12.01664 -11.50522 -11.44282 -11.33152 -11.24514 -10.98333 -10.38080 -10.20973 -9.96563 -9.64148 -9.49331 -8.09528 -7.89507 -7.19722 -6.83678 -4.70764 2.16396 2.71691 2.88212 2.98346 2.99273 3.04292 3.23404 3.78736 3.80918 4.04000 4.49315 4.54949 4.62592 5.07774 5.15091 5.39195 5.56515 5.68850 5.80261 5.82816 5.99746 6.41113 6.48263 6.69147 6.84316 7.03848 7.22590 7.33240 7.52944 7.81319 8.03358 8.21930 8.47727 8.64528 8.68242 9.52404 10.02702 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.004886 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.791277 B = 5728.915412 C = 6471.004864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.151 4.151 3 C 0.281 3.719 4 F -0.191 7.191 5 F -0.183 7.183 6 C 0.472 3.528 7 O -0.447 6.447 8 N -0.639 5.639 9 C 0.328 3.672 10 C -0.231 4.231 11 C 0.141 3.859 12 C -0.452 4.452 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.793 5.793 16 Si 0.916 3.084 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.278 4.278 21 C 0.119 3.881 22 N -0.557 5.557 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.415 0.585 29 H 0.135 0.865 30 H 0.282 0.718 31 H 0.105 0.895 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 -4.427 0.805 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C 0.241 3.759 4 F -0.172 7.172 5 F -0.164 7.164 6 C 0.252 3.748 7 O -0.315 6.315 8 N -0.285 5.285 9 C 0.104 3.896 10 C -0.256 4.256 11 C 0.133 3.867 12 C -0.483 4.483 13 H 0.102 0.898 14 C -0.144 4.144 15 N -0.419 5.419 16 Si 0.740 3.260 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.196 1.196 20 C -0.302 4.302 21 C -0.035 4.035 22 N -0.276 5.276 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.251 0.749 29 H 0.153 0.847 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.485 -5.595 0.035 11.013 hybrid contribution 0.464 2.013 0.980 2.287 sum -9.021 -3.583 1.015 9.759 Atomic orbital electron populations 1.21778 0.93424 1.03057 1.03066 1.22384 0.98095 0.91498 1.06932 1.21604 0.91078 0.90856 0.72378 1.93022 1.90181 1.83156 1.50850 1.93054 1.89654 1.83011 1.50644 1.20728 0.88135 0.84686 0.81288 1.90837 1.67197 1.32229 1.41209 1.43369 1.06124 1.21686 1.57355 1.18144 0.81805 0.93283 0.96348 1.21699 0.95466 1.00240 1.08220 1.17601 0.91084 0.90644 0.87409 1.19643 0.99440 0.94853 1.34378 0.89827 1.25977 0.94730 0.99708 0.93962 1.69728 1.15311 1.22766 1.34121 0.86128 0.80441 0.79648 0.79770 1.18289 1.19799 1.19605 1.21951 0.99397 1.01086 1.07718 1.21746 0.88457 0.96514 0.96822 1.67097 1.10340 1.26923 1.23232 0.91111 0.91774 0.91722 0.87551 0.88373 0.74858 0.84719 0.90657 0.87709 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.67 37.16 0.36 -1.12 16 2 C -0.15 -1.81 5.06 -26.73 -0.14 -1.95 16 3 C 0.28 4.21 2.01 -27.88 -0.06 4.15 16 4 F -0.19 -2.73 15.94 2.25 0.04 -2.69 16 5 F -0.18 -2.84 16.53 2.25 0.04 -2.81 16 6 C 0.47 9.05 7.18 -10.98 -0.08 8.97 16 7 O -0.45 -9.83 14.39 5.57 0.08 -9.75 16 8 N -0.64 -12.96 5.34 -11.49 -0.06 -13.02 16 9 C 0.33 7.94 7.40 -154.70 -1.15 6.80 16 10 C -0.23 -5.82 8.61 -38.48 -0.33 -6.15 16 11 C 0.14 3.65 5.60 -106.55 -0.60 3.05 16 12 C -0.45 -11.40 9.14 -37.65 -0.34 -11.74 16 13 H 0.08 2.01 7.87 -52.48 -0.41 1.60 16 14 C 0.07 1.77 5.31 -17.35 -0.09 1.68 16 15 N -0.79 -19.33 10.70 55.55 0.59 -18.74 16 16 Si 0.92 17.69 29.57 -169.99 -5.03 12.66 16 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 C -0.28 -6.66 9.90 -38.71 -0.38 -7.05 16 21 C 0.12 2.79 11.15 -17.68 -0.20 2.59 16 22 N -0.56 -13.98 7.89 -12.52 -0.10 -14.08 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.60 7.80 -51.93 -0.41 0.19 16 25 H 0.06 0.62 7.80 -51.93 -0.41 0.21 16 26 H 0.11 1.29 7.87 -51.93 -0.41 0.89 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.42 7.30 8.19 -40.82 -0.33 6.96 16 29 H 0.14 3.38 6.11 -52.48 -0.32 3.06 16 30 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 31 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 32 H 0.13 2.55 8.06 -52.48 -0.42 2.12 16 LS Contribution 289.04 15.07 4.36 4.36 Total: -1.00 -29.16 289.04 -6.20 -35.36 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.11 Total: 9.47 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -3.00 Total: -0.77 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.43 Total: -45.83 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.07 Total: -5.50 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.16 -6.20 -35.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.316 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds