Wall clock time and date at job start Mon Mar 30 2020 00:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46577 * 2 1 4 4 F 1.39893 * 109.47198 * 60.00582 * 3 2 1 5 5 F 1.39895 * 109.47466 * 300.00095 * 3 2 1 6 6 C 1.50712 * 109.46646 * 180.02562 * 3 2 1 7 7 O 1.21270 * 119.99852 * 25.00027 * 6 3 2 8 8 N 1.34772 * 119.99549 * 205.00444 * 6 3 2 9 9 C 1.39477 * 119.99704 * 185.06673 * 8 6 3 10 10 C 1.38593 * 119.58142 * 185.35896 * 9 8 6 11 11 C 1.40807 * 118.79768 * 179.70225 * 10 9 8 12 12 C 1.41541 * 120.99621 * 180.25772 * 11 10 9 13 13 H 1.08005 * 119.99703 * 153.75839 * 12 11 10 14 14 C 1.40030 * 119.99967 * 333.75181 * 12 11 10 15 15 N 1.30736 * 120.00368 * 350.16087 * 14 12 11 16 16 Si 1.86806 * 119.99754 * 170.15624 * 14 12 11 17 17 H 1.48503 * 109.47115 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46715 * 119.99975 * 16 14 12 19 19 H 1.48497 * 109.47018 * 239.99953 * 16 14 12 20 20 C 1.41173 * 118.00381 * 0.27647 * 11 10 9 21 21 C 1.37588 * 119.01835 * 359.97438 * 20 11 10 22 22 N 1.32076 * 121.10714 * 0.02754 * 21 20 11 23 23 H 1.08998 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47154 * 299.99454 * 1 2 3 25 25 H 1.09002 * 109.47044 * 59.99802 * 1 2 3 26 26 H 1.08999 * 109.46662 * 240.00373 * 2 1 3 27 27 H 1.08992 * 109.47145 * 120.00116 * 2 1 3 28 28 H 0.97002 * 120.00343 * 5.06208 * 8 6 3 29 29 H 1.08005 * 120.59706 * 359.97438 * 10 9 8 30 30 H 0.96996 * 120.00394 * 180.02562 * 15 14 12 31 31 H 1.08002 * 120.49239 * 179.97438 * 20 11 10 32 32 H 1.08004 * 119.44781 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.5737 2.1019 1.1423 5 9 1.5736 2.1021 -1.1422 6 6 3.5470 1.4426 -0.0006 7 8 4.1532 0.4908 -0.4449 8 7 4.2210 2.5003 0.4926 9 6 5.6116 2.5476 0.3964 10 6 6.3047 3.5829 1.0036 11 6 7.7087 3.6110 0.9013 12 6 8.4632 4.6435 1.5080 13 1 9.4880 4.4644 1.7981 14 6 7.8810 5.8972 1.7318 15 7 6.7145 6.1784 1.2128 16 14 8.7712 7.1680 2.7722 17 1 10.0646 6.6074 3.2391 18 1 9.0242 8.3843 1.9586 19 1 7.9325 7.5227 3.9452 20 6 8.3413 2.5787 0.1752 21 6 7.5682 1.5953 -0.3977 22 7 6.2529 1.6051 -0.2784 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.7390 3.2288 0.9145 29 1 5.7776 4.3518 1.5491 30 1 6.3114 7.0469 1.3675 31 1 9.4161 2.5611 0.0710 32 1 8.0448 0.8024 -0.9551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830367543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:58 Heat of formation + Delta-G solvation = -120.309129 kcal Electronic energy + Delta-G solvation = -20390.311802 eV Core-core repulsion = 16792.900033 eV Total energy + Delta-G solvation = -3597.411769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.39450 -48.35701 -41.39859 -39.70459 -36.36150 -35.69393 -34.61779 -32.52399 -30.90774 -28.52053 -27.96323 -24.38824 -23.89315 -22.66897 -21.68971 -19.81299 -19.60645 -18.96175 -17.93909 -17.55548 -17.06068 -16.49373 -16.11525 -16.10069 -15.71602 -15.54790 -14.89123 -14.70174 -14.61577 -14.49533 -14.37917 -14.23625 -13.96285 -13.21080 -13.04412 -12.89000 -12.73433 -12.44675 -12.18123 -12.15546 -11.88787 -11.69251 -11.26706 -11.21958 -10.00308 -9.76006 -9.02331 -8.64099 -6.62522 0.45855 0.94179 1.28756 1.41215 1.44237 1.56220 1.58906 2.19082 2.52727 2.76640 2.79312 3.21881 3.39762 3.67026 4.06099 4.18729 4.23190 4.58447 4.65349 4.68972 4.85473 4.91829 4.97027 4.99656 5.20077 5.25581 5.38622 5.48850 5.81183 5.96328 6.26246 6.43898 6.69620 6.78888 6.83180 7.67080 8.25405 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.004886 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.791277 B = 5728.915412 C = 6471.004864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.148 4.148 3 C 0.294 3.706 4 F -0.184 7.184 5 F -0.184 7.184 6 C 0.468 3.532 7 O -0.476 6.476 8 N -0.639 5.639 9 C 0.324 3.676 10 C -0.250 4.250 11 C 0.112 3.888 12 C -0.480 4.480 13 H 0.087 0.913 14 C 0.036 3.964 15 N -0.818 5.818 16 Si 0.991 3.009 17 H -0.256 1.256 18 H -0.266 1.266 19 H -0.263 1.263 20 C -0.289 4.289 21 C 0.115 3.885 22 N -0.578 5.578 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.425 0.575 29 H 0.129 0.871 30 H 0.292 0.708 31 H 0.121 0.879 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -4.211 1.319 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.254 3.746 4 F -0.165 7.165 5 F -0.165 7.165 6 C 0.249 3.751 7 O -0.346 6.346 8 N -0.286 5.286 9 C 0.099 3.901 10 C -0.276 4.276 11 C 0.104 3.896 12 C -0.510 4.510 13 H 0.105 0.895 14 C -0.180 4.180 15 N -0.444 5.444 16 Si 0.811 3.189 17 H -0.180 1.180 18 H -0.191 1.191 19 H -0.188 1.188 20 C -0.313 4.313 21 C -0.039 4.039 22 N -0.298 5.298 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.263 0.737 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.137 -5.385 0.544 11.491 hybrid contribution 0.643 1.941 0.787 2.191 sum -9.494 -3.444 1.331 10.186 Atomic orbital electron populations 1.21794 0.91107 1.04704 1.03214 1.22480 0.99957 0.88891 1.07274 1.21474 0.87957 0.92739 0.72447 1.93040 1.89741 1.83276 1.50486 1.93057 1.89295 1.83300 1.50866 1.21494 0.90045 0.83629 0.79941 1.90810 1.68566 1.33105 1.42084 1.43427 1.04959 1.22622 1.57611 1.18357 0.83407 0.92732 0.95573 1.21680 0.95635 1.00828 1.09419 1.18033 0.91806 0.91642 0.88105 1.19944 0.99895 0.95781 1.35418 0.89490 1.26853 0.95396 1.01236 0.94529 1.69770 1.16431 1.23822 1.34410 0.85012 0.79178 0.76706 0.77975 1.17965 1.19120 1.18752 1.22158 1.00344 1.00990 1.07798 1.22254 0.88216 0.96997 0.96426 1.67226 1.11139 1.27447 1.24011 0.88758 0.91426 0.91764 0.87714 0.87630 0.73694 0.85335 0.89683 0.86081 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.67 71.98 0.70 -1.77 16 2 C -0.15 -3.29 5.06 30.60 0.15 -3.13 16 3 C 0.29 8.45 2.01 29.85 0.06 8.51 16 4 F -0.18 -4.99 15.94 44.97 0.72 -4.27 16 5 F -0.18 -5.51 16.53 44.97 0.74 -4.76 16 6 C 0.47 17.80 7.18 87.66 0.63 18.43 16 7 O -0.48 -20.93 14.39 -3.00 -0.04 -20.97 16 8 N -0.64 -26.10 5.34 -308.66 -1.65 -27.75 16 9 C 0.32 15.95 7.40 132.75 0.98 16.93 16 10 C -0.25 -12.90 8.61 22.98 0.20 -12.70 16 11 C 0.11 5.92 5.60 -21.12 -0.12 5.80 16 12 C -0.48 -24.42 9.14 23.52 0.21 -24.21 16 13 H 0.09 4.21 7.87 -2.91 -0.02 4.19 16 14 C 0.04 1.71 5.31 85.29 0.45 2.16 16 15 N -0.82 -39.98 10.70 21.84 0.23 -39.74 16 16 Si 0.99 35.54 29.57 68.60 2.03 37.57 16 17 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 18 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 20 C -0.29 -13.98 9.90 22.84 0.23 -13.76 16 21 C 0.11 5.37 11.15 84.50 0.94 6.31 16 22 N -0.58 -29.25 7.89 -193.53 -1.53 -30.78 16 23 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 25 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 26 H 0.10 2.39 7.87 -2.39 -0.02 2.38 16 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.42 15.06 8.19 -92.71 -0.76 14.30 16 29 H 0.13 6.65 6.11 -2.91 -0.02 6.63 16 30 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 31 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 32 H 0.16 6.15 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -62.38 289.04 5.35 -57.03 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.41 Total: 31.10 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.44 Total: 2.58 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -2.94 Total: -98.27 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.04 Total: -20.97 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 1.46 Total: -9.03 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -62.38 5.35 -57.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.280 kcal (2) G-P(sol) polarization free energy of solvation -62.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds