Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.08998 * 115.54816 * 325.73971 * 15 13 12 17 17 C 1.52981 * 117.49684 * 111.39413 * 15 13 12 18 18 C 1.53097 * 117.49840 * 180.02562 * 15 13 12 19 19 C 1.52927 * 117.37859 * 145.23002 * 18 15 13 20 20 C 1.53081 * 109.68430 * 279.49433 * 19 18 15 21 21 S 1.81632 * 109.05449 * 299.80809 * 20 19 18 22 22 C 1.81632 * 102.49660 * 55.77162 * 21 20 19 23 23 C 1.52937 * 117.37469 * 359.76685 * 18 15 13 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09000 * 117.49679 * 215.00241 * 17 15 13 29 29 H 1.08999 * 117.49821 * 359.97438 * 17 15 13 30 30 H 1.09005 * 109.43508 * 39.55074 * 19 18 15 31 31 H 1.08997 * 109.44285 * 159.42505 * 19 18 15 32 32 H 1.08998 * 109.53954 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.54050 * 59.68400 * 20 19 18 34 34 H 1.08996 * 109.53869 * 184.34920 * 22 21 20 35 35 H 1.09003 * 109.53681 * 64.10328 * 22 21 20 36 36 H 1.09003 * 109.43547 * 200.57480 * 23 18 15 37 37 H 1.08998 * 109.43065 * 320.48593 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 3.4105 -1.4079 -3.4145 17 6 1.7531 -0.6472 -4.7344 18 6 2.9304 0.3305 -4.7642 19 6 4.0957 -0.0034 -5.6964 20 6 5.4012 0.5312 -5.1018 21 16 5.2738 2.3335 -4.9159 22 6 3.7798 2.5192 -3.8998 23 6 2.6115 1.8168 -4.5959 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7006 1.1552 3.4844 28 1 1.8107 -1.5242 -5.3791 29 1 0.7555 -0.2301 -4.5965 30 1 4.1672 -1.0846 -5.8148 31 1 3.9252 0.4569 -6.6696 32 1 6.2301 0.2916 -5.7678 33 1 5.5712 0.0751 -4.1265 34 1 3.5497 3.5778 -3.7800 35 1 3.9459 2.0680 -2.9215 36 1 2.4498 2.2662 -5.5757 37 1 1.7106 1.9283 -3.9925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835160321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = -72.128667 kcal Electronic energy + Delta-G solvation = -19225.616196 eV Core-core repulsion = 16287.674419 eV Total energy + Delta-G solvation = -2937.941778 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36746 -38.17509 -35.55988 -33.32908 -32.50078 -31.56409 -29.65043 -25.70965 -25.32381 -23.81068 -23.26470 -21.48271 -19.86555 -18.95305 -17.12152 -16.70651 -16.35261 -15.62374 -15.26254 -14.78097 -14.61683 -14.08200 -13.83010 -13.72525 -13.25285 -12.88681 -12.57260 -12.37115 -12.15293 -12.05367 -11.82516 -11.34471 -11.25073 -11.09973 -10.88007 -10.59939 -10.41751 -10.38577 -10.29830 -10.00430 -9.65517 -9.48754 -9.28602 -8.93638 -8.53170 -7.62122 -6.22233 -4.29158 1.86605 2.60169 2.72295 3.21175 3.27575 3.31830 3.45082 3.74615 4.29445 4.51714 4.61101 4.70256 4.81321 4.96069 5.11183 5.20860 5.34631 5.44438 5.51920 5.53121 5.57461 5.71485 5.76972 5.88242 5.98824 6.02552 6.24565 6.38453 6.60779 6.83454 6.86781 7.14371 7.56600 7.68276 7.90154 8.10216 8.60052 8.85310 9.36718 10.85204 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.004743 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.041306 B = 5902.389344 C = 6135.907858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.352 6.352 13 C 0.481 3.519 14 O -0.514 6.514 15 C -0.158 4.158 16 H 0.129 0.871 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.081 4.081 20 C -0.077 4.077 21 S -0.290 6.290 22 C -0.059 4.059 23 C -0.087 4.087 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.015 0.985 27 H 0.266 0.734 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 -1.671 -15.737 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.268 6.268 13 C 0.325 3.675 14 O -0.405 6.405 15 C -0.177 4.177 16 H 0.147 0.853 17 C -0.173 4.173 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.226 4.226 21 S -0.064 6.064 22 C -0.207 4.207 23 C -0.125 4.125 24 H 0.055 0.945 25 H 0.118 0.882 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.635 -0.412 -15.910 16.576 hybrid contribution -0.536 -1.315 1.528 2.086 sum 4.099 -1.727 -14.382 15.054 Atomic orbital electron populations 1.22158 0.97554 1.00087 1.01379 1.20652 0.91362 0.93901 0.77729 0.93529 1.21064 1.32391 1.13555 0.88902 0.91317 1.24881 0.94882 0.95096 0.99078 1.69900 1.36049 1.22630 1.24111 0.86227 0.78646 0.79533 0.81792 1.19479 1.20699 1.20679 1.86480 1.75410 1.43642 1.21249 1.22240 0.74546 0.85439 0.85312 1.90525 1.49183 1.16562 1.84240 1.21935 1.05282 1.03410 0.87051 0.85312 1.23125 0.95148 1.01113 0.97937 1.21712 0.97975 0.93805 0.96971 1.21307 0.91332 1.01181 0.98153 1.23314 1.00573 0.94019 1.04656 1.86624 1.39224 1.09691 1.70844 1.23369 0.92632 1.04445 1.00275 1.21497 0.99880 0.90474 1.00658 0.94477 0.88206 0.96588 0.92423 0.87449 0.87891 0.90577 0.89809 0.87905 0.89786 0.88085 0.88979 0.91362 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.32 37.16 0.35 -3.51 16 2 C 0.22 5.72 2.56 -27.88 -0.07 5.65 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.57 8.90 -34.44 -0.31 -14.88 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 O -0.35 -8.27 9.86 -39.24 -0.39 -8.66 16 13 C 0.48 9.56 7.49 36.00 0.27 9.83 16 14 O -0.51 -10.92 10.56 -18.75 -0.20 -11.12 16 15 C -0.16 -2.28 6.02 -91.73 -0.55 -2.83 16 16 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 17 C -0.14 -1.57 9.58 -26.71 -0.26 -1.83 16 18 C -0.10 -1.27 1.76 -154.50 -0.27 -1.54 16 19 C -0.08 -0.79 5.46 -26.73 -0.15 -0.93 16 20 C -0.08 -0.83 6.47 37.20 0.24 -0.59 16 21 S -0.29 -3.87 22.26 -107.50 -2.39 -6.26 16 22 C -0.06 -0.87 5.92 37.19 0.22 -0.65 16 23 C -0.09 -1.17 4.69 -26.73 -0.13 -1.30 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.10 2.68 6.06 -51.93 -0.31 2.36 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.09 1.60 6.57 -51.93 -0.34 1.25 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.70 5.70 -51.93 -0.30 1.40 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -29.38 309.42 -8.97 -38.35 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.52 Total: 2.48 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.75 Total: -10.97 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.63 Total: -24.47 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.59 Total: -19.77 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.39 Total: -6.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.38 -8.97 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.781 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds