Wall clock time and date at job start Mon Mar 30 2020 01:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.08998 * 115.54816 * 325.73971 * 15 13 12 17 17 C 1.52981 * 117.49684 * 111.39413 * 15 13 12 18 18 C 1.53097 * 117.49840 * 180.02562 * 15 13 12 19 19 C 1.52927 * 117.37859 * 145.23002 * 18 15 13 20 20 C 1.53081 * 109.68430 * 279.49433 * 19 18 15 21 21 S 1.81632 * 109.05449 * 299.80809 * 20 19 18 22 22 C 1.81632 * 102.49660 * 55.77162 * 21 20 19 23 23 C 1.52937 * 117.37469 * 359.76685 * 18 15 13 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09000 * 117.49679 * 215.00241 * 17 15 13 29 29 H 1.08999 * 117.49821 * 359.97438 * 17 15 13 30 30 H 1.09005 * 109.43508 * 39.55074 * 19 18 15 31 31 H 1.08997 * 109.44285 * 159.42505 * 19 18 15 32 32 H 1.08998 * 109.53954 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.54050 * 59.68400 * 20 19 18 34 34 H 1.08996 * 109.53869 * 184.34920 * 22 21 20 35 35 H 1.09003 * 109.53681 * 64.10328 * 22 21 20 36 36 H 1.09003 * 109.43547 * 200.57480 * 23 18 15 37 37 H 1.08998 * 109.43065 * 320.48593 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 3.4105 -1.4079 -3.4145 17 6 1.7531 -0.6472 -4.7344 18 6 2.9304 0.3305 -4.7642 19 6 4.0957 -0.0034 -5.6964 20 6 5.4012 0.5312 -5.1018 21 16 5.2738 2.3335 -4.9159 22 6 3.7798 2.5192 -3.8998 23 6 2.6115 1.8168 -4.5959 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7006 1.1552 3.4844 28 1 1.8107 -1.5242 -5.3791 29 1 0.7555 -0.2301 -4.5965 30 1 4.1672 -1.0846 -5.8148 31 1 3.9252 0.4569 -6.6696 32 1 6.2301 0.2916 -5.7678 33 1 5.5712 0.0751 -4.1265 34 1 3.5497 3.5778 -3.7800 35 1 3.9459 2.0680 -2.9215 36 1 2.4498 2.2662 -5.5757 37 1 1.7106 1.9283 -3.9925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835160321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:37 Heat of formation + Delta-G solvation = -87.191281 kcal Electronic energy + Delta-G solvation = -19226.269360 eV Core-core repulsion = 16287.674419 eV Total energy + Delta-G solvation = -2938.594941 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.78581 -39.56020 -37.26505 -35.36493 -33.54817 -32.56588 -31.69382 -27.51155 -26.89980 -24.98454 -24.23914 -23.16778 -21.40319 -20.15952 -18.75826 -18.56070 -17.49044 -17.32064 -16.78801 -16.43178 -15.87010 -15.37148 -14.93683 -14.87421 -14.62718 -14.30211 -13.97643 -13.86232 -13.56325 -13.32364 -13.16060 -13.06001 -12.92830 -12.83354 -12.42075 -12.27210 -12.16142 -11.72968 -11.55847 -11.40696 -11.06053 -11.00359 -10.76660 -10.61590 -10.54735 -8.69105 -8.32077 -6.48970 0.84285 1.22406 1.39558 1.40075 1.53873 1.60459 1.95656 2.37823 2.62781 2.98680 3.48166 3.64433 3.68381 3.76396 4.01817 4.11641 4.24048 4.34691 4.47898 4.50527 4.52302 4.69842 4.74194 4.77107 4.80346 4.83517 4.96036 4.99829 5.04928 5.15049 5.17732 5.33286 5.47282 5.61380 5.91471 6.11416 6.57064 7.00114 7.24273 8.75714 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.004743 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.041306 B = 5902.389344 C = 6135.907858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.220 3.780 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.270 1.270 12 O -0.365 6.365 13 C 0.469 3.531 14 O -0.535 6.535 15 C -0.178 4.178 16 H 0.147 0.853 17 C -0.112 4.112 18 C -0.096 4.096 19 C -0.074 4.074 20 C -0.073 4.073 21 S -0.305 6.305 22 C -0.058 4.058 23 C -0.084 4.084 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.024 0.976 27 H 0.271 0.729 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -3.647 -17.502 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.195 1.195 12 O -0.282 6.282 13 C 0.315 3.685 14 O -0.426 6.426 15 C -0.196 4.196 16 H 0.165 0.835 17 C -0.149 4.149 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.221 4.221 21 S -0.080 6.080 22 C -0.206 4.206 23 C -0.123 4.123 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.405 -2.383 -17.702 18.661 hybrid contribution -0.752 -0.616 2.008 2.231 sum 4.653 -3.000 -15.694 16.642 Atomic orbital electron populations 1.21961 0.96766 1.00263 1.00789 1.20293 0.91937 0.91948 0.79152 0.97538 1.21330 1.33294 1.13914 0.90116 0.91702 1.25818 0.94658 0.95673 1.02129 1.70015 1.36556 1.23716 1.25178 0.85149 0.78412 0.78429 0.77517 1.18774 1.20106 1.19513 1.86463 1.76131 1.43997 1.21590 1.23407 0.73813 0.85458 0.85858 1.90533 1.49934 1.17635 1.84538 1.22030 1.07691 1.04932 0.84992 0.83487 1.23338 0.94083 1.01930 0.95508 1.21851 0.99674 0.92493 0.95645 1.21363 0.88953 1.03255 0.97623 1.23478 1.02486 0.91135 1.04994 1.86644 1.38280 1.13125 1.69903 1.23199 0.94288 1.03995 0.99084 1.21423 0.97987 0.92136 1.00756 0.93724 0.90159 0.95704 0.91973 0.83310 0.88824 0.87361 0.88145 0.85163 0.90769 0.88739 0.92580 0.89441 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.25 9.32 71.98 0.67 -6.58 16 2 C 0.22 12.17 2.56 29.85 0.08 12.24 16 3 H 0.01 0.42 7.16 -2.38 -0.02 0.40 16 4 C -0.55 -31.52 8.90 25.60 0.23 -31.29 16 5 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.93 11.31 21.45 0.24 -52.69 16 8 Si 0.98 43.12 29.54 68.60 2.03 45.15 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 O -0.37 -17.72 9.86 -51.37 -0.51 -18.23 16 13 C 0.47 19.20 7.49 71.23 0.53 19.73 16 14 O -0.53 -24.05 10.56 21.95 0.23 -23.82 16 15 C -0.18 -4.89 6.02 -11.52 -0.07 -4.96 16 16 H 0.15 3.49 8.14 -2.39 -0.02 3.47 16 17 C -0.11 -2.22 9.58 30.61 0.29 -1.93 16 18 C -0.10 -2.11 1.76 -52.17 -0.09 -2.21 16 19 C -0.07 -1.11 5.46 30.60 0.17 -0.95 16 20 C -0.07 -1.36 6.47 72.01 0.47 -0.89 16 21 S -0.31 -7.85 22.26 -56.49 -1.26 -9.11 16 22 C -0.06 -1.74 5.92 72.00 0.43 -1.32 16 23 C -0.08 -2.26 4.69 30.59 0.14 -2.12 16 24 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.08 4.46 6.06 -2.38 -0.01 4.45 16 26 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 1.07 8.08 -2.38 -0.02 1.05 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.06 2.08 6.57 -2.39 -0.02 2.06 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.58 5.70 -2.39 -0.01 2.56 16 Total: -1.00 -66.91 309.42 5.08 -61.83 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.05 Total: 15.74 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.29 Total: -18.88 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.24 Total: -52.69 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.27 Total: -42.05 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.26 Total: -9.11 kcal Total: -66.91 5.08 -61.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835160321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.360 kcal (2) G-P(sol) polarization free energy of solvation -66.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds