Wall clock time and date at job start Mon Mar 30 2020 01:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.34232 * 117.00336 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99538 * 0.02562 * 12 11 10 14 14 C 1.50693 * 120.00088 * 180.02562 * 12 11 10 15 15 H 1.08998 * 115.54919 * 325.73777 * 14 12 11 16 16 C 1.52980 * 117.49525 * 111.39179 * 14 12 11 17 17 C 1.53102 * 117.49219 * 180.02562 * 14 12 11 18 18 C 1.52932 * 117.37066 * 145.22720 * 17 14 12 19 19 C 1.53073 * 109.68930 * 279.49516 * 18 17 14 20 20 S 1.81631 * 109.05385 * 299.81409 * 19 18 17 21 21 C 1.81625 * 102.49902 * 55.77119 * 20 19 18 22 22 C 1.52925 * 117.37636 * 359.77194 * 17 14 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.08996 * 117.49740 * 214.99338 * 16 14 12 29 29 H 1.09001 * 117.50031 * 0.02562 * 16 14 12 30 30 H 1.09004 * 109.43624 * 39.56213 * 18 17 14 31 31 H 1.08997 * 109.43354 * 159.42495 * 18 17 14 32 32 H 1.09000 * 109.54202 * 179.97438 * 19 18 17 33 33 H 1.08999 * 109.54466 * 59.68384 * 19 18 17 34 34 H 1.08999 * 109.54142 * 184.34985 * 21 20 19 35 35 H 1.09004 * 109.53772 * 64.10424 * 21 20 19 36 36 H 1.08999 * 109.43759 * 200.56722 * 22 17 14 37 37 H 1.09005 * 109.43551 * 320.43723 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9196 -0.0011 12 6 2.2503 -6.0454 -0.0018 13 8 3.4569 -5.9821 -0.0013 14 6 1.5661 -7.3880 -0.0030 15 1 0.6283 -7.4383 0.5503 16 6 1.6868 -8.2411 -1.2671 17 6 2.4553 -8.6344 -0.0030 18 6 1.9549 -9.8551 0.7705 19 6 2.2495 -9.6768 2.2620 20 16 4.0427 -9.5070 2.4960 21 6 4.4497 -8.1073 1.4125 22 6 3.9692 -8.4181 -0.0072 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8287 -8.8528 -1.5453 29 1 2.2615 -7.8314 -2.0978 30 1 0.8801 -9.9622 0.6234 31 1 2.4611 -10.7485 0.4050 32 1 1.8916 -10.5478 2.8110 33 1 1.7477 -8.7813 2.6283 34 1 5.5286 -7.9525 1.4066 35 1 3.9532 -7.2079 1.7768 36 1 4.4634 -9.3202 -0.3680 37 1 4.2145 -7.5835 -0.6640 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835264834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:48 Heat of formation + Delta-G solvation = -77.349518 kcal Electronic energy + Delta-G solvation = -18604.866234 eV Core-core repulsion = 15666.698063 eV Total energy + Delta-G solvation = -2938.168171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.71542 -38.49681 -35.96325 -33.40164 -32.71796 -31.75429 -30.32680 -26.26133 -24.84126 -23.72373 -23.43954 -21.18618 -20.58349 -19.20650 -17.56000 -16.65769 -16.38258 -16.02703 -15.84003 -15.11910 -14.63191 -14.34304 -14.11635 -13.91794 -13.45118 -13.22902 -12.97682 -12.53045 -12.41934 -12.37354 -12.14471 -11.53383 -11.26860 -11.09226 -10.85210 -10.77761 -10.69972 -10.60651 -10.23159 -9.97326 -9.75034 -9.63333 -9.53055 -9.33119 -8.47097 -7.77854 -6.13215 -4.18003 1.69966 2.28452 2.47824 2.97961 3.28049 3.32223 3.35318 3.47546 4.30452 4.34659 4.40348 4.52094 4.56567 4.79001 5.02907 5.16143 5.19174 5.23286 5.25326 5.33728 5.42079 5.46946 5.59029 5.71639 5.74217 5.83123 5.98471 6.03468 6.06463 6.19653 6.58614 6.98009 7.51909 7.58003 7.83235 8.14632 8.22511 8.87241 9.46564 10.98220 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.003605 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.984894 B = 7765.013933 C = 8063.218948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.352 6.352 12 C 0.484 3.516 13 O -0.511 6.511 14 C -0.160 4.160 15 H 0.133 0.867 16 C -0.133 4.133 17 C -0.103 4.103 18 C -0.082 4.082 19 C -0.078 4.078 20 S -0.286 6.286 21 C -0.061 4.061 22 C -0.088 4.088 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 -20.730 0.342 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.268 6.268 12 C 0.328 3.672 13 O -0.401 6.401 14 C -0.179 4.179 15 H 0.151 0.849 16 C -0.170 4.170 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.227 4.227 20 S -0.060 6.060 21 C -0.209 4.209 22 C -0.126 4.126 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.997 -21.122 1.015 21.521 hybrid contribution -0.380 1.851 -0.645 1.996 sum 3.617 -19.271 0.370 19.611 Atomic orbital electron populations 1.69964 1.06107 1.27141 1.49592 1.24983 0.94918 0.99392 0.94794 0.86526 0.79494 0.82445 0.78803 1.21080 1.20038 1.20053 1.20933 0.93123 0.90115 1.52467 0.92319 1.19165 0.94183 0.89027 0.98857 1.23659 0.96380 0.78698 1.00902 1.86522 1.42422 1.15713 1.82164 1.22416 0.85929 0.86311 0.72552 1.90559 1.15445 1.87845 1.46270 1.21922 1.02466 0.87456 1.06066 0.84901 1.23168 1.02545 1.00448 0.90862 1.21754 0.94481 0.93556 1.00517 1.21323 1.01470 0.96504 0.92785 1.23330 0.94439 1.05690 0.99192 1.86707 1.10066 1.46379 1.62809 1.23359 1.04643 0.97054 0.95831 1.21511 0.90988 1.03188 0.96949 0.92619 0.95397 0.95374 0.92304 0.92292 0.87121 0.87735 0.90393 0.89631 0.87733 0.89792 0.88008 0.89258 0.91073 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.67 5.40 37.16 0.20 1.87 16 11 O -0.35 -6.94 10.22 -39.26 -0.40 -7.34 16 12 C 0.48 7.99 7.52 36.00 0.27 8.26 16 13 O -0.51 -8.97 11.09 -18.75 -0.21 -9.18 16 14 C -0.16 -1.92 6.02 -91.73 -0.55 -2.47 16 15 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 16 C -0.13 -1.26 9.58 -26.70 -0.26 -1.52 16 17 C -0.10 -1.03 1.76 -154.49 -0.27 -1.31 16 18 C -0.08 -0.66 5.46 -26.73 -0.15 -0.80 16 19 C -0.08 -0.71 6.47 37.20 0.24 -0.47 16 20 S -0.29 -3.31 22.25 -107.50 -2.39 -5.70 16 21 C -0.06 -0.75 5.92 37.19 0.22 -0.53 16 22 C -0.09 -1.00 4.69 -26.73 -0.13 -1.12 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 27 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.29 6.57 -51.92 -0.34 0.95 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.40 5.70 -51.93 -0.30 1.10 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -30.12 314.54 -9.20 -39.32 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.67 Total: -1.51 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.98 Total: -11.08 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.61 Total: -16.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.39 Total: -5.70 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.12 -9.20 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835264834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.031 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds