Wall clock time and date at job start Mon Mar 30 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48503 * 109.46820 * 239.99839 * 3 2 1 5 5 H 1.48502 * 109.47012 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47266 * 119.99616 * 3 2 1 7 7 C 1.38801 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00504 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99562 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99706 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00036 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00090 * 179.97438 * 11 10 9 14 14 C 1.45195 * 117.00012 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.47411 * 330.00985 * 14 13 11 16 16 C 1.52999 * 109.47107 * 90.00165 * 14 13 11 17 17 C 1.53005 * 117.49648 * 8.62341 * 16 14 13 18 18 C 1.52994 * 59.99915 * 252.50599 * 17 16 14 19 19 C 1.53000 * 109.47594 * 210.00127 * 14 13 11 20 20 C 1.53787 * 113.60890 * 60.00208 * 19 14 13 21 21 C 1.53784 * 87.07923 * 139.98364 * 20 19 14 22 22 C 1.53779 * 87.08045 * 334.56667 * 21 20 19 23 23 H 0.96999 * 120.00454 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47067 * 60.00117 * 10 9 7 25 25 H 1.09004 * 109.47376 * 300.00120 * 10 9 7 26 26 H 1.08997 * 115.55301 * 154.32423 * 16 14 13 27 27 H 1.08995 * 117.49901 * 0.02562 * 17 16 14 28 28 H 1.09004 * 117.49560 * 145.01835 * 17 16 14 29 29 H 1.09004 * 117.50016 * 252.50849 * 18 17 16 30 30 H 1.09006 * 117.49960 * 107.48559 * 18 17 16 31 31 H 1.09000 * 112.90915 * 288.75314 * 19 14 13 32 32 H 1.09004 * 113.61202 * 254.53117 * 20 19 14 33 33 H 1.08994 * 113.61447 * 25.43549 * 20 19 14 34 34 H 1.09002 * 113.61478 * 89.11632 * 21 20 19 35 35 H 1.09004 * 113.61162 * 220.01809 * 21 20 19 36 36 H 1.09006 * 113.61307 * 270.88660 * 22 21 20 37 37 H 1.08999 * 113.69146 * 139.99146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7956 -5.5016 0.0011 13 8 2.8406 -6.3389 0.0008 14 6 2.2610 -7.6702 0.0020 15 1 1.3004 -7.6478 0.5167 16 6 2.0559 -8.1385 -1.4401 17 6 2.6524 -7.2762 -2.5544 18 6 1.1389 -7.2990 -2.3319 19 6 3.2034 -8.6362 0.7227 20 6 3.4763 -8.2532 2.1869 21 6 3.3875 -9.7533 2.5136 22 6 2.5015 -9.8926 1.2645 23 1 -0.4851 0.8400 -0.0004 24 1 3.1243 -3.7313 0.8905 25 1 3.1245 -3.7313 -0.8895 26 1 2.0503 -9.2184 -1.5874 27 1 3.1912 -6.3756 -2.2601 28 1 3.0394 -7.7889 -3.4350 29 1 0.5301 -7.8268 -3.0661 30 1 0.6815 -6.4132 -1.8911 31 1 4.1068 -8.8524 0.1524 32 1 4.4669 -7.8287 2.3499 33 1 2.6810 -7.6602 2.6385 34 1 4.3412 -10.2749 2.4329 35 1 2.8646 -9.9669 3.4459 36 1 1.4396 -9.7477 1.4640 37 1 2.7039 -10.7913 0.6819 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836041733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:05 Heat of formation + Delta-G solvation = -65.530940 kcal Electronic energy + Delta-G solvation = -18562.050506 eV Core-core repulsion = 15624.394828 eV Total energy + Delta-G solvation = -2937.655679 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94576 -39.74268 -37.98591 -36.77374 -34.62324 -31.69366 -29.83025 -27.71124 -26.53738 -24.48072 -23.39774 -22.88649 -21.06782 -20.38502 -19.83619 -18.63339 -18.19271 -17.33992 -16.90326 -16.36035 -16.18221 -15.94633 -15.37396 -15.02009 -14.59007 -14.17333 -13.83341 -13.56514 -13.36974 -13.20244 -13.00312 -12.88658 -12.75103 -12.68797 -12.52802 -12.05190 -11.80105 -11.66769 -11.57486 -11.37529 -11.19052 -11.15581 -10.98953 -10.71574 -10.39837 -8.74595 -8.38290 -6.18237 1.02115 1.13640 1.40195 1.43903 1.53088 1.87402 2.23257 2.80184 2.96693 3.25049 3.43671 3.62311 3.66397 3.86987 3.90309 3.95951 4.01549 4.06243 4.13001 4.29600 4.38249 4.42800 4.59982 4.76075 4.83374 4.85642 4.91792 4.95133 5.09762 5.10772 5.17030 5.21444 5.27981 5.39183 5.40551 5.59423 6.16618 6.73582 7.03217 8.70735 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.004194 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.250838 B = 6673.920991 C = 7129.759676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.084 0.916 9 S -0.133 6.133 10 C -0.110 4.110 11 C 0.486 3.514 12 O -0.513 6.513 13 O -0.341 6.341 14 C 0.121 3.879 15 H 0.068 0.932 16 C -0.163 4.163 17 C -0.167 4.167 18 C -0.205 4.205 19 C -0.101 4.101 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.124 4.124 23 H 0.273 0.727 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.146 0.854 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 -19.558 0.143 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.699 4.699 8 H 0.102 0.898 9 S 0.094 5.906 10 C -0.259 4.259 11 C 0.328 3.672 12 O -0.402 6.402 13 O -0.258 6.258 14 C 0.066 3.934 15 H 0.086 0.914 16 C -0.180 4.180 17 C -0.204 4.204 18 C -0.242 4.242 19 C -0.119 4.119 20 C -0.181 4.181 21 C -0.169 4.169 22 C -0.161 4.161 23 H 0.082 0.918 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.164 0.836 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.810 -19.766 0.148 21.254 hybrid contribution 1.115 1.505 -0.036 1.873 sum 8.926 -18.261 0.113 20.326 Atomic orbital electron populations 1.70150 1.07938 1.28884 1.47612 1.26098 0.95953 1.03214 0.93442 0.85003 0.77843 0.75607 0.79566 1.18642 1.20246 1.18623 1.23169 0.95482 0.91709 1.59542 0.89753 1.85491 1.09037 0.98888 1.97147 1.23090 1.04309 0.90661 1.07802 1.22915 0.85043 0.87552 0.71663 1.90627 1.18163 1.85889 1.45477 1.86546 1.40099 1.15710 1.83494 1.22558 0.97351 0.77899 0.95586 0.91389 1.22827 1.05284 0.99557 0.90372 1.22967 0.95266 1.02008 1.00165 1.23212 0.94172 1.02917 1.03854 1.22724 0.99094 0.94820 0.95248 1.22899 1.01919 0.97814 0.95493 1.22810 1.00908 0.95032 0.98174 1.22925 0.99203 0.96667 0.97317 0.91812 0.86468 0.86540 0.83645 0.90091 0.86239 0.87149 0.90901 0.86915 0.90997 0.92029 0.88399 0.90872 0.90461 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.17 13.22 21.65 0.29 -54.88 16 2 C 0.02 1.02 5.49 84.86 0.47 1.49 16 3 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.13 -7.27 20.58 -56.49 -1.16 -8.44 16 10 C -0.11 -4.55 6.27 71.24 0.45 -4.10 16 11 C 0.49 18.83 6.92 71.24 0.49 19.33 16 12 O -0.51 -22.89 12.91 21.97 0.28 -22.60 16 13 O -0.34 -10.75 8.20 -51.41 -0.42 -11.17 16 14 C 0.12 3.13 2.18 30.59 0.07 3.19 16 15 H 0.07 2.06 6.96 -2.38 -0.02 2.04 16 16 C -0.16 -3.73 5.70 -10.79 -0.06 -3.79 16 17 C -0.17 -4.05 9.79 30.59 0.30 -3.75 16 18 C -0.20 -5.71 9.85 30.59 0.30 -5.41 16 19 C -0.10 -1.89 3.34 -10.27 -0.03 -1.92 16 20 C -0.14 -2.80 7.45 31.12 0.23 -2.57 16 21 C -0.13 -1.85 8.08 31.12 0.25 -1.59 16 22 C -0.12 -1.79 7.63 31.12 0.24 -1.56 16 23 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.12 4.45 8.14 -2.40 -0.02 4.43 16 25 H 0.12 4.43 8.14 -2.39 -0.02 4.41 16 26 H 0.15 2.44 8.11 -2.39 -0.02 2.42 16 27 H 0.08 2.27 6.90 -2.39 -0.02 2.26 16 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.07 2.67 5.37 -2.38 -0.01 2.65 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.25 7.96 -2.38 -0.02 1.23 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -68.83 320.78 5.41 -63.43 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.05 Total: 19.79 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.34 Total: -31.31 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.29 Total: -54.88 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.14 Total: -33.78 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.16 Total: -8.44 kcal Total: -68.83 5.41 -63.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836041733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.105 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds