Wall clock time and date at job start Mon Mar 30 2020 01:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86808 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46967 * 300.00313 * 3 2 1 6 6 H 1.48498 * 109.46766 * 60.00005 * 3 2 1 7 7 C 1.38801 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00049 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99796 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.46899 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00644 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00274 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47151 * 30.00239 * 14 13 11 16 16 C 1.52996 * 109.46830 * 269.99900 * 14 13 11 17 17 C 1.53000 * 117.49997 * 65.00286 * 16 14 13 18 18 C 1.53002 * 60.02940 * 252.49592 * 17 16 14 19 19 C 1.52999 * 109.47227 * 150.00136 * 14 13 11 20 20 C 1.53781 * 113.61623 * 39.13160 * 19 14 13 21 21 C 1.53944 * 87.02439 * 220.04978 * 20 19 14 22 22 C 1.53784 * 113.61145 * 301.52808 * 19 14 13 23 23 H 0.96994 * 120.00434 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46800 * 59.99927 * 10 9 7 25 25 H 1.08996 * 109.46996 * 299.99897 * 10 9 7 26 26 H 1.09007 * 115.55004 * 210.66958 * 16 14 13 27 27 H 1.09002 * 117.49833 * 359.97438 * 17 16 14 28 28 H 1.09002 * 117.49953 * 144.99738 * 17 16 14 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 31 31 H 1.09000 * 112.85090 * 170.33397 * 19 14 13 32 32 H 1.08997 * 113.61789 * 334.57448 * 20 19 14 33 33 H 1.09009 * 113.60921 * 105.47125 * 20 19 14 34 34 H 1.08999 * 113.54171 * 270.81394 * 21 20 19 35 35 H 1.08999 * 113.66988 * 139.93113 * 21 20 19 36 36 H 1.08995 * 113.61331 * 254.52786 * 22 19 14 37 37 H 1.09000 * 113.61752 * 25.35211 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7957 -5.5016 -0.0009 13 8 2.8408 -6.3388 -0.0022 14 6 2.2612 -7.6701 -0.0023 15 1 1.3001 -7.6479 -0.5159 16 6 2.0581 -8.1380 1.4401 17 6 1.0525 -7.3673 2.2978 18 6 2.5526 -7.2173 2.5584 19 6 3.2028 -8.6362 -0.7241 20 6 4.6904 -8.3840 -0.4269 21 6 4.9540 -8.6715 -1.9161 22 6 3.5033 -8.2332 -2.1774 23 1 -0.4850 0.8400 0.0004 24 1 3.1253 -3.7317 0.8875 25 1 3.1239 -3.7309 -0.8925 26 1 2.1372 -9.2132 1.6011 27 1 0.5359 -6.5267 1.8346 28 1 0.4700 -7.9355 3.0232 29 1 3.0227 -6.2781 2.2666 30 1 2.9571 -7.6869 3.4550 31 1 2.9060 -9.6791 -0.6127 32 1 4.9094 -7.3569 -0.1350 33 1 5.1321 -9.1195 0.2456 34 1 5.1373 -9.7244 -2.1304 35 1 5.6969 -8.0117 -2.3643 36 1 2.9880 -8.8470 -2.9161 37 1 3.3957 -7.1649 -2.3654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836041734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:07 Heat of formation + Delta-G solvation = -49.030869 kcal Electronic energy + Delta-G solvation = -18725.190590 eV Core-core repulsion = 15788.250408 eV Total energy + Delta-G solvation = -2936.940182 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68614 -38.60137 -36.78642 -35.42669 -32.49137 -30.21565 -28.68141 -25.68221 -25.56290 -23.57869 -22.25626 -21.66956 -19.95544 -19.23847 -17.94983 -17.04478 -16.88909 -16.02479 -15.48141 -14.86608 -14.84730 -14.22764 -14.02036 -13.93205 -12.89620 -12.75135 -12.62707 -12.45608 -12.29827 -12.10581 -11.79822 -11.30176 -11.10224 -11.08378 -10.94657 -10.81528 -10.55559 -10.46637 -10.41163 -10.10106 -9.89395 -9.73967 -9.69318 -9.12931 -8.35847 -6.60473 -6.28106 -4.00450 2.66251 2.66926 3.19127 3.23771 3.28983 3.50859 3.89690 4.14249 4.36393 4.54667 4.59451 4.78258 4.92078 4.97732 5.02477 5.05158 5.07967 5.23718 5.40450 5.51493 5.60865 5.64402 5.75389 5.77446 5.80297 5.81188 5.85486 5.93295 5.98866 6.06450 6.17648 6.22312 6.37317 6.46350 6.79781 7.55070 8.21861 8.29921 9.17720 10.79444 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.004485 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.074274 B = 6241.478389 C = 6763.989548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.076 0.924 9 S -0.057 6.057 10 C -0.130 4.130 11 C 0.477 3.523 12 O -0.485 6.485 13 O -0.348 6.348 14 C 0.127 3.873 15 H 0.088 0.912 16 C -0.174 4.174 17 C -0.185 4.185 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.136 4.136 23 H 0.269 0.731 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -17.270 0.141 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.169 5.831 10 C -0.277 4.277 11 C 0.318 3.682 12 O -0.370 6.370 13 O -0.266 6.266 14 C 0.072 3.928 15 H 0.106 0.894 16 C -0.192 4.192 17 C -0.221 4.221 18 C -0.207 4.207 19 C -0.125 4.125 20 C -0.164 4.164 21 C -0.180 4.180 22 C -0.174 4.174 23 H 0.079 0.921 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.563 -17.458 0.140 18.651 hybrid contribution 1.740 1.135 0.070 2.079 sum 8.304 -16.323 0.209 18.315 Atomic orbital electron populations 1.70016 1.05984 1.27523 1.46717 1.24996 0.95045 0.99093 0.94333 0.86084 0.79629 0.81652 0.77955 1.19509 1.20503 1.20492 1.22886 0.95041 0.91214 1.59241 0.90595 1.85403 1.04309 0.96523 1.96858 1.23296 1.06950 0.91240 1.06263 1.23282 0.85398 0.87291 0.72190 1.90622 1.16945 1.85472 1.44009 1.86552 1.40786 1.15063 1.84220 1.21935 0.97287 0.79314 0.94249 0.89380 1.22681 1.06607 0.98155 0.91737 1.23294 0.92525 1.03744 1.02579 1.22904 0.97438 1.01611 0.98740 1.22698 0.95588 0.98159 0.96010 1.22863 0.94638 1.02862 0.96053 1.22826 0.97033 1.00987 0.97188 1.22934 0.96647 1.02120 0.95665 0.92127 0.88147 0.88116 0.86991 0.86884 0.89001 0.88340 0.89001 0.87862 0.88792 0.91885 0.90568 0.91435 0.91626 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.98 9.50 30.94 0.29 -14.68 16 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.51 20.58 -107.50 -2.21 -3.72 16 10 C -0.13 -2.61 6.27 36.00 0.23 -2.39 16 11 C 0.48 8.89 6.82 36.00 0.25 9.13 16 12 O -0.48 -10.23 12.81 -18.75 -0.24 -10.47 16 13 O -0.35 -5.32 6.62 -39.27 -0.26 -5.58 16 14 C 0.13 1.67 2.40 -26.73 -0.06 1.61 16 15 H 0.09 1.30 7.16 -51.93 -0.37 0.92 16 16 C -0.17 -2.11 5.72 -90.59 -0.52 -2.63 16 17 C -0.18 -2.56 9.87 -26.73 -0.26 -2.82 16 18 C -0.17 -2.19 9.74 -26.69 -0.26 -2.45 16 19 C -0.11 -1.10 3.54 -89.81 -0.32 -1.42 16 20 C -0.13 -1.27 7.49 -25.83 -0.19 -1.46 16 21 C -0.14 -1.31 8.09 -25.83 -0.21 -1.51 16 22 C -0.14 -1.42 7.54 -25.91 -0.20 -1.62 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 25 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 26 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.11 1.94 5.56 -51.93 -0.29 1.65 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.43 6.66 -51.93 -0.35 1.08 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.05 7.72 -51.93 -0.40 0.65 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -30.66 318.13 -9.10 -39.76 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.54 Total: 2.32 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.35 Total: -18.24 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.73 Total: -24.96 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.50 Total: -16.05 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.66 -9.10 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836041734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.267 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds