Wall clock time and date at job start Mon Mar 30 2020 01:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86808 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46967 * 300.00313 * 3 2 1 6 6 H 1.48498 * 109.46766 * 60.00005 * 3 2 1 7 7 C 1.38801 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00049 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99796 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.46899 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00644 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00274 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47151 * 30.00239 * 14 13 11 16 16 C 1.52996 * 109.46830 * 269.99900 * 14 13 11 17 17 C 1.53000 * 117.49997 * 65.00286 * 16 14 13 18 18 C 1.53002 * 60.02940 * 252.49592 * 17 16 14 19 19 C 1.52999 * 109.47227 * 150.00136 * 14 13 11 20 20 C 1.53781 * 113.61623 * 39.13160 * 19 14 13 21 21 C 1.53944 * 87.02439 * 220.04978 * 20 19 14 22 22 C 1.53784 * 113.61145 * 301.52808 * 19 14 13 23 23 H 0.96994 * 120.00434 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46800 * 59.99927 * 10 9 7 25 25 H 1.08996 * 109.46996 * 299.99897 * 10 9 7 26 26 H 1.09007 * 115.55004 * 210.66958 * 16 14 13 27 27 H 1.09002 * 117.49833 * 359.97438 * 17 16 14 28 28 H 1.09002 * 117.49953 * 144.99738 * 17 16 14 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 31 31 H 1.09000 * 112.85090 * 170.33397 * 19 14 13 32 32 H 1.08997 * 113.61789 * 334.57448 * 20 19 14 33 33 H 1.09009 * 113.60921 * 105.47125 * 20 19 14 34 34 H 1.08999 * 113.54171 * 270.81394 * 21 20 19 35 35 H 1.08999 * 113.66988 * 139.93113 * 21 20 19 36 36 H 1.08995 * 113.61331 * 254.52786 * 22 19 14 37 37 H 1.09000 * 113.61752 * 25.35211 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7957 -5.5016 -0.0009 13 8 2.8408 -6.3388 -0.0022 14 6 2.2612 -7.6701 -0.0023 15 1 1.3001 -7.6479 -0.5159 16 6 2.0581 -8.1380 1.4401 17 6 1.0525 -7.3673 2.2978 18 6 2.5526 -7.2173 2.5584 19 6 3.2028 -8.6362 -0.7241 20 6 4.6904 -8.3840 -0.4269 21 6 4.9540 -8.6715 -1.9161 22 6 3.5033 -8.2332 -2.1774 23 1 -0.4850 0.8400 0.0004 24 1 3.1253 -3.7317 0.8875 25 1 3.1239 -3.7309 -0.8925 26 1 2.1372 -9.2132 1.6011 27 1 0.5359 -6.5267 1.8346 28 1 0.4700 -7.9355 3.0232 29 1 3.0227 -6.2781 2.2666 30 1 2.9571 -7.6869 3.4550 31 1 2.9060 -9.6791 -0.6127 32 1 4.9094 -7.3569 -0.1350 33 1 5.1321 -9.1195 0.2456 34 1 5.1373 -9.7244 -2.1304 35 1 5.6969 -8.0117 -2.3643 36 1 2.9880 -8.8470 -2.9161 37 1 3.3957 -7.1649 -2.3654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836041734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:07 Heat of formation + Delta-G solvation = -64.629039 kcal Electronic energy + Delta-G solvation = -18725.866977 eV Core-core repulsion = 15788.250408 eV Total energy + Delta-G solvation = -2937.616569 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.97237 -39.66583 -37.87518 -36.73156 -34.62566 -31.68771 -29.87773 -27.71800 -26.48292 -24.45013 -23.35583 -23.00805 -21.05720 -20.18377 -19.88466 -18.54050 -18.12318 -17.33447 -16.91019 -16.31385 -16.21589 -15.92054 -15.31362 -15.03569 -14.61194 -14.06375 -13.87826 -13.51823 -13.43265 -13.24880 -13.11053 -12.93472 -12.83524 -12.64758 -12.31395 -11.88346 -11.77017 -11.60222 -11.56121 -11.33914 -11.24025 -11.18783 -10.85990 -10.67226 -10.38912 -8.74503 -8.38966 -6.18468 1.02990 1.15006 1.40224 1.40861 1.55151 1.89244 2.22447 2.82602 2.96235 3.26467 3.43495 3.65055 3.74078 3.83391 3.94697 3.99118 4.04806 4.09427 4.12982 4.31076 4.39988 4.54327 4.59798 4.76983 4.82170 4.93597 4.97016 4.97952 5.11807 5.17765 5.18817 5.23519 5.28979 5.39679 5.48690 5.67982 6.16762 6.75376 7.02992 8.70556 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.004485 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.074274 B = 6241.478389 C = 6763.989548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.084 0.916 9 S -0.133 6.133 10 C -0.110 4.110 11 C 0.485 3.515 12 O -0.513 6.513 13 O -0.336 6.336 14 C 0.119 3.881 15 H 0.069 0.931 16 C -0.159 4.159 17 C -0.204 4.204 18 C -0.168 4.168 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.145 4.145 23 H 0.273 0.727 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.475 -18.771 0.375 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.697 4.697 8 H 0.102 0.898 9 S 0.094 5.906 10 C -0.258 4.258 11 C 0.328 3.672 12 O -0.401 6.401 13 O -0.253 6.253 14 C 0.064 3.936 15 H 0.087 0.913 16 C -0.176 4.176 17 C -0.240 4.240 18 C -0.205 4.205 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.171 4.171 22 C -0.183 4.183 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.164 0.836 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.848 -18.980 0.370 20.944 hybrid contribution 1.044 1.475 -0.014 1.807 sum 9.892 -17.504 0.356 20.110 Atomic orbital electron populations 1.70163 1.07927 1.28749 1.47771 1.26098 0.95953 1.03214 0.93488 0.84902 0.78600 0.76257 0.78188 1.18112 1.19811 1.19794 1.23223 0.95452 0.91703 1.59285 0.89804 1.85500 1.09052 0.98908 1.97128 1.23076 1.04266 0.90749 1.07724 1.22891 0.85053 0.87550 0.71721 1.90626 1.18198 1.85881 1.45436 1.86536 1.39749 1.15566 1.83478 1.22285 0.97373 0.78409 0.95525 0.91324 1.22819 1.04653 0.99667 0.90504 1.23223 0.93254 1.03557 1.04011 1.22935 0.96308 1.01175 1.00062 1.22829 0.95091 0.98567 0.95276 1.22830 0.94242 1.02239 0.97100 1.22821 0.95768 1.02195 0.96279 1.22952 0.98228 1.00851 0.96235 0.91823 0.86604 0.86563 0.83584 0.90790 0.87120 0.90435 0.86403 0.84929 0.90835 0.90029 0.88374 0.91670 0.90517 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 2 C 0.02 0.99 5.49 84.86 0.47 1.46 16 3 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.13 -7.26 20.58 -56.49 -1.16 -8.42 16 10 C -0.11 -4.49 6.27 71.23 0.45 -4.04 16 11 C 0.49 18.54 6.82 71.23 0.49 19.02 16 12 O -0.51 -22.66 12.81 21.96 0.28 -22.38 16 13 O -0.34 -10.24 6.62 -51.44 -0.34 -10.58 16 14 C 0.12 3.00 2.40 30.59 0.07 3.07 16 15 H 0.07 2.04 7.16 -2.39 -0.02 2.02 16 16 C -0.16 -3.53 5.72 -10.77 -0.06 -3.60 16 17 C -0.20 -5.56 9.87 30.60 0.30 -5.26 16 18 C -0.17 -4.07 9.74 30.62 0.30 -3.77 16 19 C -0.10 -1.80 3.54 -10.27 -0.04 -1.84 16 20 C -0.13 -2.18 7.49 31.18 0.23 -1.95 16 21 C -0.13 -2.07 8.09 31.18 0.25 -1.82 16 22 C -0.15 -2.79 7.54 31.12 0.23 -2.56 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.12 4.37 8.14 -2.39 -0.02 4.36 16 25 H 0.12 4.39 8.14 -2.40 -0.02 4.37 16 26 H 0.15 2.31 8.08 -2.38 -0.02 2.29 16 27 H 0.07 2.66 5.56 -2.39 -0.01 2.65 16 28 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.21 6.66 -2.39 -0.02 2.19 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.58 7.01 -2.39 -0.02 1.57 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.46 7.72 -2.39 -0.02 1.44 16 Total: -1.00 -68.60 318.13 5.48 -63.11 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 1.05 Total: 19.56 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 3.34 Total: -31.71 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.29 Total: -54.80 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.06 Total: -32.96 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.16 Total: -8.42 kcal Total: -68.60 5.48 -63.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836041734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.518 kcal (2) G-P(sol) polarization free energy of solvation -68.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds