Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46955 * 119.99506 * 2 1 4 4 O 1.21538 * 119.99537 * 179.97438 * 3 2 1 5 5 O 1.34792 * 120.00095 * 359.97438 * 3 2 1 6 6 C 1.45206 * 116.99979 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47091 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 6 5 9 9 S 1.81002 * 109.46909 * 180.02562 * 8 7 6 10 10 C 1.76208 * 99.99928 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99585 * 0.02562 * 10 9 8 12 12 C 1.38798 * 119.99699 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00589 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99648 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46975 * 90.00068 * 14 12 10 16 16 H 1.48495 * 109.47259 * 210.00101 * 14 12 10 17 17 H 1.48499 * 109.47238 * 330.00643 * 14 12 10 18 18 C 1.33082 * 120.00459 * 179.97438 * 2 1 3 19 19 C 1.51405 * 136.31596 * 179.63119 * 18 2 1 20 20 C 1.53373 * 87.51444 * 206.05404 * 19 18 2 21 21 C 1.51401 * 136.31411 * 359.97438 * 18 2 1 22 22 H 1.08999 * 109.47270 * 90.00150 * 1 2 3 23 23 H 1.09006 * 109.47036 * 210.00193 * 1 2 3 24 24 H 1.09003 * 109.47435 * 330.00162 * 1 2 3 25 25 H 1.09001 * 109.47157 * 299.99843 * 6 5 3 26 26 H 1.09004 * 109.47122 * 59.99976 * 6 5 3 27 27 H 1.08992 * 109.47056 * 300.00206 * 7 6 5 28 28 H 1.09004 * 109.47006 * 60.00090 * 7 6 5 29 29 H 1.09001 * 109.47372 * 300.00036 * 8 7 6 30 30 H 1.08996 * 109.47261 * 60.00575 * 8 7 6 31 31 H 0.96990 * 120.00389 * 180.02562 * 13 12 10 32 32 H 1.09002 * 113.56184 * 320.63495 * 19 18 2 33 33 H 1.08998 * 113.55851 * 91.37480 * 19 18 2 34 34 H 1.09007 * 113.97351 * 220.28949 * 20 19 18 35 35 H 1.09004 * 113.60171 * 88.79905 * 20 19 18 36 36 H 1.08998 * 113.56136 * 268.62605 * 21 18 2 37 37 H 1.08997 * 113.56224 * 39.36018 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4571 1.2727 0.0005 5 8 1.5676 2.4400 -0.0005 6 6 2.3584 3.6579 -0.0011 7 6 1.4263 4.8712 -0.0023 8 6 2.2595 6.1543 -0.0022 9 16 1.1568 7.5897 -0.0028 10 6 2.3466 8.8895 -0.0034 11 1 3.4010 8.6563 -0.0037 12 6 1.9284 10.2130 -0.0045 13 7 0.6432 10.4972 -0.0047 14 14 3.1896 11.5910 -0.0044 15 1 3.5249 11.9552 -1.4045 16 1 2.6290 12.7752 0.6944 17 1 4.4178 11.1378 0.6967 18 6 2.1725 -1.1525 0.0005 19 6 3.6256 -1.5777 -0.0060 20 6 3.1714 -2.8827 -0.6717 21 6 1.8144 -2.6235 0.0016 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 2.9872 3.6832 0.8889 26 1 2.9872 3.6824 -0.8911 27 1 0.7978 4.8456 -0.8924 28 1 0.7971 4.8469 0.8876 29 1 2.8877 6.1796 0.8882 30 1 2.8889 6.1789 -0.8917 31 1 0.3510 11.4221 -0.0058 32 1 4.2572 -0.9611 -0.6455 33 1 4.0425 -1.7194 0.9910 34 1 3.6841 -3.7705 -0.3015 35 1 3.1405 -2.8297 -1.7601 36 1 1.7350 -3.0519 1.0008 37 1 0.9606 -2.8646 -0.6315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838237621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = -70.829824 kcal Electronic energy + Delta-G solvation = -17380.356382 eV Core-core repulsion = 14442.470927 eV Total energy + Delta-G solvation = -2937.885455 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49374 -38.98202 -36.50819 -33.79276 -33.07551 -32.43604 -26.99294 -26.68061 -25.86258 -25.48107 -23.64105 -21.39567 -21.10262 -18.38888 -17.47751 -17.17461 -16.58914 -16.39627 -15.80477 -14.83335 -14.78561 -14.59538 -14.17791 -13.49821 -13.38876 -12.85856 -12.81124 -12.62966 -12.52634 -12.27091 -12.07170 -11.93809 -11.38128 -11.31209 -11.12054 -10.95744 -10.93918 -10.86195 -10.66306 -10.24423 -10.22514 -9.61966 -9.21282 -9.07156 -8.34857 -6.55738 -6.24208 -3.95165 0.91278 2.59605 2.83380 3.21750 3.22666 3.29228 3.54616 4.03740 4.14637 4.20746 4.34260 4.69365 4.71893 4.99353 5.11596 5.15684 5.20369 5.22605 5.26150 5.36688 5.42399 5.46660 5.48528 5.51476 5.61303 5.73399 5.79994 5.84882 5.87703 6.02587 6.19160 6.33609 6.47185 6.50030 6.69818 7.59649 7.78244 8.35487 9.22133 10.83975 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.055759 B = 0.002618 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.044697 B =10690.638224 C =11128.226892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.140 4.140 3 C 0.503 3.497 4 O -0.512 6.512 5 O -0.350 6.350 6 C 0.074 3.926 7 C -0.097 4.097 8 C -0.114 4.114 9 S -0.124 6.124 10 C -0.518 4.518 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.869 5.869 14 Si 0.920 3.080 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.069 4.069 19 C -0.107 4.107 20 C -0.141 4.141 21 C -0.102 4.102 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.268 0.732 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -25.645 -0.073 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C 0.348 3.652 4 O -0.402 6.402 5 O -0.267 6.267 6 C -0.001 4.001 7 C -0.136 4.136 8 C -0.263 4.263 9 S 0.104 5.896 10 C -0.666 4.666 11 H 0.091 0.909 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.746 3.254 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.070 4.070 19 C -0.144 4.144 20 C -0.179 4.179 21 C -0.139 4.139 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.351 -25.382 -0.070 25.385 hybrid contribution 2.266 1.034 -0.033 2.491 sum 2.617 -24.348 -0.103 24.489 Atomic orbital electron populations 1.20639 0.89324 1.03390 1.02808 1.19752 0.96457 0.88226 1.09642 1.21163 0.86067 0.84826 0.73110 1.90828 1.14894 1.88352 1.46150 1.86556 1.41608 1.14816 1.83675 1.23253 0.93934 0.80449 1.02508 1.21277 0.97848 0.90162 1.04295 1.23178 1.01987 0.97778 1.03321 1.84650 1.12348 0.95743 1.96879 1.22696 0.93554 0.91706 1.58631 0.90850 1.25021 0.95999 0.98232 0.94547 1.70014 1.13700 1.19626 1.47160 0.86145 0.80551 0.80321 0.78385 1.20247 1.20734 1.19667 1.23374 0.98380 0.93867 0.91334 1.22256 0.93785 0.96165 1.02154 1.22727 0.96521 0.98115 1.00513 1.22300 0.98763 0.90771 1.02043 0.91023 0.91453 0.90245 0.91217 0.91242 0.90353 0.90356 0.91745 0.91754 0.92254 0.89521 0.88216 0.90219 0.89613 0.87915 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.80 36.01 0.35 -0.56 16 2 C -0.14 -1.55 6.00 -102.89 -0.62 -2.17 16 3 C 0.50 7.20 7.88 34.26 0.27 7.47 16 4 O -0.51 -8.39 14.95 -19.29 -0.29 -8.67 16 5 O -0.35 -5.18 9.49 -40.74 -0.39 -5.56 16 6 C 0.07 1.12 5.48 37.16 0.20 1.32 16 7 C -0.10 -1.63 5.60 -26.73 -0.15 -1.78 16 8 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 9 S -0.12 -3.26 21.44 -107.50 -2.30 -5.56 16 10 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 12 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 13 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 14 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.07 -0.65 6.60 -100.46 -0.66 -1.31 16 19 C -0.11 -0.94 6.99 -27.56 -0.19 -1.13 16 20 C -0.14 -0.87 8.17 -26.19 -0.21 -1.08 16 21 C -0.10 -0.62 7.72 -27.40 -0.21 -0.83 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.45 7.91 -51.93 -0.41 0.04 16 24 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.29 8.14 -51.91 -0.42 0.86 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 0.92 7.49 -51.93 -0.39 0.53 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -32.31 331.74 -8.90 -41.21 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.82 Total: -2.90 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.81 Total: -14.84 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.73 Total: -25.26 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.67 Total: -14.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.31 -8.90 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838237621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.618 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds