Wall clock time and date at job start Mon Mar 30 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46955 * 119.99506 * 2 1 4 4 O 1.21538 * 119.99537 * 179.97438 * 3 2 1 5 5 O 1.34792 * 120.00095 * 359.97438 * 3 2 1 6 6 C 1.45206 * 116.99979 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47091 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 6 5 9 9 S 1.81002 * 109.46909 * 180.02562 * 8 7 6 10 10 C 1.76208 * 99.99928 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99585 * 0.02562 * 10 9 8 12 12 C 1.38798 * 119.99699 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00589 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99648 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46975 * 90.00068 * 14 12 10 16 16 H 1.48495 * 109.47259 * 210.00101 * 14 12 10 17 17 H 1.48499 * 109.47238 * 330.00643 * 14 12 10 18 18 C 1.33082 * 120.00459 * 179.97438 * 2 1 3 19 19 C 1.51405 * 136.31596 * 179.63119 * 18 2 1 20 20 C 1.53373 * 87.51444 * 206.05404 * 19 18 2 21 21 C 1.51401 * 136.31411 * 359.97438 * 18 2 1 22 22 H 1.08999 * 109.47270 * 90.00150 * 1 2 3 23 23 H 1.09006 * 109.47036 * 210.00193 * 1 2 3 24 24 H 1.09003 * 109.47435 * 330.00162 * 1 2 3 25 25 H 1.09001 * 109.47157 * 299.99843 * 6 5 3 26 26 H 1.09004 * 109.47122 * 59.99976 * 6 5 3 27 27 H 1.08992 * 109.47056 * 300.00206 * 7 6 5 28 28 H 1.09004 * 109.47006 * 60.00090 * 7 6 5 29 29 H 1.09001 * 109.47372 * 300.00036 * 8 7 6 30 30 H 1.08996 * 109.47261 * 60.00575 * 8 7 6 31 31 H 0.96990 * 120.00389 * 180.02562 * 13 12 10 32 32 H 1.09002 * 113.56184 * 320.63495 * 19 18 2 33 33 H 1.08998 * 113.55851 * 91.37480 * 19 18 2 34 34 H 1.09007 * 113.97351 * 220.28949 * 20 19 18 35 35 H 1.09004 * 113.60171 * 88.79905 * 20 19 18 36 36 H 1.08998 * 113.56136 * 268.62605 * 21 18 2 37 37 H 1.08997 * 113.56224 * 39.36018 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4571 1.2727 0.0005 5 8 1.5676 2.4400 -0.0005 6 6 2.3584 3.6579 -0.0011 7 6 1.4263 4.8712 -0.0023 8 6 2.2595 6.1543 -0.0022 9 16 1.1568 7.5897 -0.0028 10 6 2.3466 8.8895 -0.0034 11 1 3.4010 8.6563 -0.0037 12 6 1.9284 10.2130 -0.0045 13 7 0.6432 10.4972 -0.0047 14 14 3.1896 11.5910 -0.0044 15 1 3.5249 11.9552 -1.4045 16 1 2.6290 12.7752 0.6944 17 1 4.4178 11.1378 0.6967 18 6 2.1725 -1.1525 0.0005 19 6 3.6256 -1.5777 -0.0060 20 6 3.1714 -2.8827 -0.6717 21 6 1.8144 -2.6235 0.0016 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 2.9872 3.6832 0.8889 26 1 2.9872 3.6824 -0.8911 27 1 0.7978 4.8456 -0.8924 28 1 0.7971 4.8469 0.8876 29 1 2.8877 6.1796 0.8882 30 1 2.8889 6.1789 -0.8917 31 1 0.3510 11.4221 -0.0058 32 1 4.2572 -0.9611 -0.6455 33 1 4.0425 -1.7194 0.9910 34 1 3.6841 -3.7705 -0.3015 35 1 3.1405 -2.8297 -1.7601 36 1 1.7350 -3.0519 1.0008 37 1 0.9606 -2.8646 -0.6315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838237621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:03 Heat of formation + Delta-G solvation = -87.758668 kcal Electronic energy + Delta-G solvation = -17381.090472 eV Core-core repulsion = 14442.470927 eV Total energy + Delta-G solvation = -2938.619545 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.56019 -39.71234 -37.68502 -35.02717 -34.60993 -34.03926 -28.31760 -27.63929 -27.42458 -26.44855 -24.60922 -22.76801 -21.96708 -19.66226 -19.15598 -18.36802 -17.76161 -17.22480 -16.91071 -16.44189 -16.26559 -15.92862 -15.32207 -14.94030 -14.31668 -14.26983 -13.83985 -13.80548 -13.36128 -13.27743 -13.12867 -12.96113 -12.94612 -12.65668 -12.52530 -12.41172 -12.39070 -12.03199 -11.70686 -11.54532 -11.50156 -11.16147 -11.05359 -10.38359 -9.95379 -8.69888 -8.39254 -6.16159 0.04484 1.26211 1.39010 1.42213 1.51913 1.83601 1.84110 2.25733 2.95173 3.23904 3.34443 3.48083 3.75420 3.81222 3.84820 3.95775 4.11441 4.20921 4.29327 4.35938 4.44934 4.65133 4.71423 4.71846 4.81412 4.84141 4.96196 4.98544 5.01931 5.04280 5.11473 5.29235 5.33400 5.38555 5.41293 5.64188 6.16590 6.66994 7.03046 8.70171 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.055759 B = 0.002618 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.044697 B =10690.638224 C =11128.226892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.168 4.168 3 C 0.496 3.504 4 O -0.542 6.542 5 O -0.353 6.353 6 C 0.081 3.919 7 C -0.085 4.085 8 C -0.091 4.091 9 S -0.184 6.184 10 C -0.541 4.541 11 H 0.074 0.926 12 C 0.016 3.984 13 N -0.906 5.906 14 Si 0.995 3.005 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.264 1.264 18 C -0.063 4.063 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.090 4.090 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.272 0.728 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -27.475 0.029 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.169 4.169 3 C 0.344 3.656 4 O -0.434 6.434 5 O -0.269 6.269 6 C 0.006 3.994 7 C -0.123 4.123 8 C -0.240 4.240 9 S 0.045 5.955 10 C -0.688 4.688 11 H 0.092 0.908 12 C -0.190 4.190 13 N -0.543 5.543 14 Si 0.817 3.183 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.188 1.188 18 C -0.064 4.064 19 C -0.158 4.158 20 C -0.168 4.168 21 C -0.126 4.126 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.826 -27.229 0.030 27.242 hybrid contribution 2.162 1.460 -0.066 2.609 sum 2.988 -25.769 -0.036 25.941 Atomic orbital electron populations 1.20634 0.87639 1.03948 1.03323 1.19870 0.97588 0.86988 1.12477 1.21897 0.86082 0.85414 0.72159 1.90808 1.16109 1.88612 1.47903 1.86550 1.41589 1.14932 1.83864 1.23011 0.93338 0.80349 1.02726 1.21093 0.97532 0.89200 1.04477 1.23061 1.01019 0.96319 1.03624 1.84626 1.15189 0.98651 1.97062 1.23048 0.93862 0.92866 1.59073 0.90823 1.26073 0.98231 1.00958 0.93698 1.70139 1.15813 1.20484 1.47819 0.85001 0.77768 0.76691 0.78852 1.19252 1.19813 1.18810 1.23928 0.99107 0.95293 0.88090 1.22431 0.93258 0.97623 1.02489 1.22721 0.96438 0.97229 1.00442 1.22412 0.99247 0.87470 1.03506 0.90525 0.89120 0.91438 0.91024 0.91089 0.90217 0.90194 0.91376 0.91378 0.91863 0.92042 0.87473 0.88082 0.89595 0.85748 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.80 71.24 0.70 -0.87 16 2 C -0.17 -3.59 6.00 -18.73 -0.11 -3.70 16 3 C 0.50 14.29 7.88 70.11 0.55 14.85 16 4 O -0.54 -18.09 14.95 19.71 0.29 -17.80 16 5 O -0.35 -10.43 9.49 -57.04 -0.54 -10.97 16 6 C 0.08 2.45 5.48 71.98 0.39 2.85 16 7 C -0.08 -2.82 5.60 30.59 0.17 -2.65 16 8 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 9 S -0.18 -9.83 21.44 -56.49 -1.21 -11.04 16 10 C -0.54 -31.41 9.50 67.95 0.65 -30.76 16 11 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 12 C 0.02 0.89 5.49 84.86 0.47 1.35 16 13 N -0.91 -54.79 13.22 21.65 0.29 -54.50 16 14 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 C -0.06 -1.10 6.60 -17.16 -0.11 -1.21 16 19 C -0.12 -2.00 6.99 30.06 0.21 -1.79 16 20 C -0.13 -1.25 8.17 30.95 0.25 -1.00 16 21 C -0.09 -0.78 7.72 30.16 0.23 -0.55 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.09 0.98 7.91 -2.38 -0.02 0.96 16 24 H 0.07 1.22 7.68 -2.39 -0.02 1.20 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 29 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 30 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 31 H 0.27 15.24 8.31 -92.72 -0.77 14.47 16 32 H 0.06 1.33 7.49 -2.39 -0.02 1.31 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -70.64 331.74 5.70 -64.94 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.04 Total: 9.96 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.81 Total: -26.79 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.29 Total: -54.50 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.25 Total: -28.76 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -9.83 SS G_CDS: -1.21 Total: -11.04 kcal Total: -70.64 5.70 -64.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838237621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.815 kcal (2) G-P(sol) polarization free energy of solvation -70.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds