Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.20831 * 120.00023 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99917 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47266 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.61554 * 55.35715 * 15 14 13 17 17 C 1.53299 * 109.61785 * 294.99891 * 15 14 13 18 18 C 1.52875 * 108.58094 * 165.82193 * 17 15 14 19 19 C 1.52707 * 110.15265 * 54.52859 * 18 17 15 20 20 H 1.09001 * 115.39704 * 127.16727 * 19 18 17 21 21 C 1.53655 * 116.03117 * 269.79499 * 19 18 17 22 22 C 1.49169 * 60.26680 * 111.29128 * 21 19 18 23 23 H 1.09009 * 116.23236 * 106.62389 * 22 21 19 24 24 C 1.52455 * 121.66694 * 250.87709 * 22 21 19 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 1.08997 * 109.47549 * 299.99640 * 14 13 11 29 29 H 1.09003 * 109.47280 * 59.99828 * 14 13 11 30 30 H 1.08995 * 109.62254 * 285.55700 * 17 15 14 31 31 H 1.09002 * 109.61685 * 45.91404 * 17 15 14 32 32 H 1.09007 * 109.35760 * 174.73524 * 18 17 15 33 33 H 1.09002 * 109.36248 * 294.45250 * 18 17 15 34 34 H 1.08994 * 117.53834 * 219.06679 * 21 19 18 35 35 H 1.09003 * 117.53277 * 4.30513 * 21 19 18 36 36 H 1.09009 * 108.37030 * 288.74986 * 24 22 21 37 37 H 1.09007 * 110.62539 * 169.02538 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7954 -5.5015 -0.0218 13 8 2.8405 -6.3389 -0.0265 14 6 2.2608 -7.6701 -0.0335 15 6 3.3797 -8.7136 -0.0389 16 1 4.0454 -8.5408 0.8068 17 6 4.1724 -8.6115 -1.3471 18 6 5.4755 -9.3952 -1.1895 19 6 5.1781 -10.8283 -0.7539 20 1 5.6284 -11.6070 -1.3696 21 6 5.1244 -11.0751 0.7617 22 6 3.8745 -11.1660 -0.0474 23 1 3.4845 -12.1691 -0.2205 24 6 2.7755 -10.1145 0.0566 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 1.6443 -7.8027 0.8555 29 1 1.6450 -7.7936 -0.9244 30 1 3.5873 -9.0345 -2.1636 31 1 4.3946 -7.5657 -1.5597 32 1 6.0058 -9.4097 -2.1417 33 1 6.0986 -8.9127 -0.4364 34 1 5.5534 -12.0043 1.1365 35 1 5.2282 -10.2102 1.4170 36 1 2.2816 -10.2282 1.0217 37 1 2.0425 -10.2452 -0.7395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845772413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = -86.681592 kcal Electronic energy + Delta-G solvation = -17930.280662 eV Core-core repulsion = 14991.707822 eV Total energy + Delta-G solvation = -2938.572840 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35069 -39.60156 -36.28271 -33.92337 -32.48264 -31.38079 -29.78712 -26.88927 -25.53559 -24.25073 -22.14076 -21.16553 -20.80505 -18.79133 -17.88388 -17.07614 -16.55846 -16.27074 -15.41266 -14.84524 -14.74549 -14.41769 -14.26628 -13.85703 -13.62911 -13.21645 -12.69415 -12.56517 -12.38356 -12.20287 -11.94033 -11.60063 -11.21732 -11.10031 -11.06779 -10.90646 -10.82175 -10.58286 -10.37426 -10.08241 -9.96498 -9.89072 -9.84707 -9.11327 -8.35323 -6.59945 -6.27143 -3.99693 2.66618 2.69403 3.20688 3.24169 3.28806 3.47413 3.54560 4.15036 4.27837 4.43438 4.49245 4.68826 4.81514 4.89778 5.01295 5.08681 5.18318 5.26228 5.29871 5.33534 5.40004 5.41826 5.50729 5.62208 5.68726 5.71570 5.79284 5.85913 5.86487 5.95431 6.00858 6.09044 6.15670 6.21075 6.74444 7.55574 8.20718 8.30592 9.18346 10.80392 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.046668 B = 0.003104 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.841432 B = 9019.682891 C = 9412.091244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.076 0.924 9 S -0.060 6.060 10 C -0.128 4.128 11 C 0.478 3.522 12 O -0.489 6.489 13 O -0.360 6.360 14 C 0.071 3.929 15 C -0.088 4.088 16 H 0.082 0.918 17 C -0.115 4.115 18 C -0.087 4.087 19 C -0.155 4.155 20 H 0.101 0.899 21 C -0.178 4.178 22 C -0.136 4.136 23 H 0.096 0.904 24 C -0.083 4.083 25 H 0.269 0.731 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.130 -20.624 -0.749 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.167 5.833 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.278 6.278 14 C -0.004 4.004 15 C -0.107 4.107 16 H 0.100 0.900 17 C -0.153 4.153 18 C -0.125 4.125 19 C -0.173 4.173 20 H 0.119 0.881 21 C -0.215 4.215 22 C -0.154 4.154 23 H 0.114 0.886 24 C -0.120 4.120 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.477 -20.816 -0.745 22.488 hybrid contribution 1.757 1.077 0.044 2.061 sum 10.234 -19.740 -0.701 22.246 Atomic orbital electron populations 1.70018 1.05992 1.27618 1.46631 1.25011 0.95071 0.99123 0.94349 0.86117 0.79409 0.81266 0.78417 1.20193 1.20714 1.19575 1.22847 0.95024 0.91180 1.59337 0.90592 1.85415 1.04449 0.96579 1.96874 1.23288 1.06899 0.91041 1.06405 1.23288 0.85204 0.87144 0.72398 1.90665 1.16987 1.85711 1.44151 1.86485 1.41210 1.15328 1.84738 1.22991 0.95684 0.79117 1.02576 1.21248 0.96684 0.92955 0.99785 0.89955 1.21625 0.96022 1.00995 0.96639 1.21023 0.97474 0.92537 1.01447 1.22239 1.01711 0.98476 0.94854 0.88114 1.22631 1.01456 1.03340 0.94062 1.21264 0.89904 1.00002 1.04248 0.88587 1.20906 0.96625 0.91898 1.02610 0.92079 0.87975 0.87980 0.91317 0.91258 0.91689 0.90623 0.91486 0.91511 0.89048 0.88640 0.91247 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.13 -2.64 6.27 36.00 0.23 -2.41 16 11 C 0.48 9.28 7.98 36.00 0.29 9.57 16 12 O -0.49 -10.88 15.61 -18.75 -0.29 -11.18 16 13 O -0.36 -5.72 9.59 -39.26 -0.38 -6.10 16 14 C 0.07 0.91 4.86 37.16 0.18 1.09 16 15 C -0.09 -0.89 2.19 -90.53 -0.20 -1.09 16 16 H 0.08 0.85 7.12 -51.93 -0.37 0.48 16 17 C -0.12 -1.13 5.25 -26.64 -0.14 -1.27 16 18 C -0.09 -0.74 5.84 -26.95 -0.16 -0.89 16 19 C -0.15 -1.21 6.29 -90.90 -0.57 -1.78 16 20 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.18 -1.35 9.56 -28.28 -0.27 -1.62 16 22 C -0.14 -1.06 5.82 -93.26 -0.54 -1.60 16 23 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 24 C -0.08 -0.70 5.28 -27.08 -0.14 -0.84 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 27 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 28 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.61 8.04 -51.93 -0.42 0.20 16 31 H 0.08 0.83 7.53 -51.93 -0.39 0.44 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.76 7.27 -51.93 -0.38 0.39 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -31.60 319.72 -9.23 -40.83 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.74 Total: -1.97 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.13 Total: -13.65 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.73 Total: -25.11 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.67 Total: -17.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.60 -9.23 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845772413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.847 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds