Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.20831 * 120.00023 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99917 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47266 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.61554 * 55.35715 * 15 14 13 17 17 C 1.53299 * 109.61785 * 294.99891 * 15 14 13 18 18 C 1.52875 * 108.58094 * 165.82193 * 17 15 14 19 19 C 1.52707 * 110.15265 * 54.52859 * 18 17 15 20 20 H 1.09001 * 115.39704 * 127.16727 * 19 18 17 21 21 C 1.53655 * 116.03117 * 269.79499 * 19 18 17 22 22 C 1.49169 * 60.26680 * 111.29128 * 21 19 18 23 23 H 1.09009 * 116.23236 * 106.62389 * 22 21 19 24 24 C 1.52455 * 121.66694 * 250.87709 * 22 21 19 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 1.08997 * 109.47549 * 299.99640 * 14 13 11 29 29 H 1.09003 * 109.47280 * 59.99828 * 14 13 11 30 30 H 1.08995 * 109.62254 * 285.55700 * 17 15 14 31 31 H 1.09002 * 109.61685 * 45.91404 * 17 15 14 32 32 H 1.09007 * 109.35760 * 174.73524 * 18 17 15 33 33 H 1.09002 * 109.36248 * 294.45250 * 18 17 15 34 34 H 1.08994 * 117.53834 * 219.06679 * 21 19 18 35 35 H 1.09003 * 117.53277 * 4.30513 * 21 19 18 36 36 H 1.09009 * 108.37030 * 288.74986 * 24 22 21 37 37 H 1.09007 * 110.62539 * 169.02538 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7954 -5.5015 -0.0218 13 8 2.8405 -6.3389 -0.0265 14 6 2.2608 -7.6701 -0.0335 15 6 3.3797 -8.7136 -0.0389 16 1 4.0454 -8.5408 0.8068 17 6 4.1724 -8.6115 -1.3471 18 6 5.4755 -9.3952 -1.1895 19 6 5.1781 -10.8283 -0.7539 20 1 5.6284 -11.6070 -1.3696 21 6 5.1244 -11.0751 0.7617 22 6 3.8745 -11.1660 -0.0474 23 1 3.4845 -12.1691 -0.2205 24 6 2.7755 -10.1145 0.0566 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 1.6443 -7.8027 0.8555 29 1 1.6450 -7.7936 -0.9244 30 1 3.5873 -9.0345 -2.1636 31 1 4.3946 -7.5657 -1.5597 32 1 6.0058 -9.4097 -2.1417 33 1 6.0986 -8.9127 -0.4364 34 1 5.5534 -12.0043 1.1365 35 1 5.2282 -10.2102 1.4170 36 1 2.2816 -10.2282 1.0217 37 1 2.0425 -10.2452 -0.7395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845772413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = -102.960909 kcal Electronic energy + Delta-G solvation = -17930.986586 eV Core-core repulsion = 14991.707822 eV Total energy + Delta-G solvation = -2939.278764 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58651 -40.54641 -37.67550 -34.80533 -34.61299 -32.12461 -31.36074 -27.96690 -27.58049 -24.99538 -23.06077 -22.22815 -21.76359 -19.94988 -19.46451 -18.57380 -17.65489 -17.53362 -16.89985 -16.62599 -16.04183 -15.65780 -15.20988 -14.82493 -14.64714 -14.60093 -14.24927 -13.73799 -13.46394 -13.19097 -13.12363 -12.92876 -12.89305 -12.66545 -12.30780 -12.07801 -11.79460 -11.72190 -11.63113 -11.50183 -11.25549 -11.16059 -10.71579 -10.48260 -10.38447 -8.74289 -8.37759 -6.17685 1.02519 1.12645 1.41276 1.43448 1.55516 1.89285 2.23828 2.88409 2.97333 3.25602 3.58190 3.64064 3.68136 3.94951 3.96273 4.15409 4.17796 4.18069 4.32527 4.37505 4.43942 4.49930 4.58789 4.63842 4.69754 4.88633 4.99228 5.02744 5.13902 5.19670 5.27851 5.30526 5.37498 5.40898 5.42213 5.49273 6.17921 6.69562 7.03956 8.71570 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.046668 B = 0.003104 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.841432 B = 9019.682891 C = 9412.091244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.108 4.108 11 C 0.487 3.513 12 O -0.523 6.523 13 O -0.349 6.349 14 C 0.065 3.935 15 C -0.080 4.080 16 H 0.081 0.919 17 C -0.116 4.116 18 C -0.086 4.086 19 C -0.158 4.158 20 H 0.112 0.888 21 C -0.178 4.178 22 C -0.138 4.138 23 H 0.108 0.892 24 C -0.081 4.081 25 H 0.273 0.727 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.116 -21.353 -0.796 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.257 4.257 11 C 0.330 3.670 12 O -0.411 6.411 13 O -0.266 6.266 14 C -0.009 4.009 15 C -0.098 4.098 16 H 0.099 0.901 17 C -0.153 4.153 18 C -0.123 4.123 19 C -0.176 4.176 20 H 0.130 0.870 21 C -0.214 4.214 22 C -0.156 4.156 23 H 0.126 0.874 24 C -0.119 4.119 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.487 -21.574 -0.792 24.001 hybrid contribution 1.169 1.157 0.057 1.646 sum 11.655 -20.418 -0.735 23.522 Atomic orbital electron populations 1.70170 1.07953 1.28801 1.47730 1.26135 0.95992 1.03313 0.93521 0.84922 0.78199 0.75826 0.78852 1.19251 1.20248 1.18163 1.23198 0.95518 0.91551 1.59319 0.89581 1.85531 1.09365 0.99146 1.97167 1.23085 1.04191 0.90172 1.08226 1.22988 0.84792 0.87522 0.71706 1.90659 1.18391 1.86186 1.45888 1.86467 1.40290 1.15958 1.83876 1.23329 0.97009 0.77903 1.02622 1.21234 0.95696 0.92913 1.00004 0.90052 1.21616 0.96838 1.00401 0.96456 1.21004 0.96613 0.92801 1.01901 1.22291 1.01860 0.98246 0.95244 0.87030 1.22678 1.01280 1.03677 0.93815 1.21302 0.89691 1.00221 1.04420 0.87397 1.20908 0.97022 0.90830 1.03109 0.91837 0.86037 0.86091 0.91288 0.91307 0.91406 0.92113 0.90649 0.91792 0.87872 0.89266 0.90784 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.04 13.22 21.65 0.29 -54.75 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -30.85 9.50 67.96 0.65 -30.20 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.14 -7.59 20.57 -56.49 -1.16 -8.75 16 10 C -0.11 -4.38 6.27 71.23 0.45 -3.93 16 11 C 0.49 18.71 7.98 71.23 0.57 19.28 16 12 O -0.52 -23.51 15.61 21.95 0.34 -23.16 16 13 O -0.35 -10.77 9.59 -51.43 -0.49 -11.26 16 14 C 0.07 1.63 4.86 71.98 0.35 1.98 16 15 C -0.08 -1.50 2.19 -10.74 -0.02 -1.53 16 16 H 0.08 1.57 7.12 -2.39 -0.02 1.55 16 17 C -0.12 -2.10 5.25 30.65 0.16 -1.94 16 18 C -0.09 -1.30 5.84 30.46 0.18 -1.12 16 19 C -0.16 -2.13 6.29 -10.98 -0.07 -2.19 16 20 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 21 C -0.18 -2.31 9.56 29.59 0.28 -2.02 16 22 C -0.14 -1.84 5.82 -12.50 -0.07 -1.92 16 23 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 24 C -0.08 -1.23 5.28 30.37 0.16 -1.07 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.12 4.45 8.14 -2.40 -0.02 4.43 16 27 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 28 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 29 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 31 H 0.06 1.28 7.53 -2.39 -0.02 1.26 16 32 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.00 8.05 -2.39 -0.02 0.98 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.27 7.27 -2.39 -0.02 1.26 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -68.14 319.72 5.14 -63.01 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.04 Total: 13.25 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.09 Total: -23.32 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.29 Total: -54.75 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.15 Total: -34.42 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.75 kcal Total: -68.14 5.14 -63.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845772413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.953 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds