Wall clock time and date at job start Mon Mar 30 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48503 * 109.47115 * 270.00749 * 3 2 1 5 5 H 1.48507 * 109.46985 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.47052 * 150.00042 * 3 2 1 7 7 C 1.38801 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99611 * 359.97438 * 7 2 1 9 9 S 1.76192 * 119.99931 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46995 * 180.02562 * 10 9 7 12 12 O 1.20829 * 120.00358 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.45191 * 117.00115 * 179.97438 * 13 11 10 15 15 C 1.53004 * 115.54891 * 179.97438 * 14 13 11 16 16 C 1.54883 * 110.76024 * 303.19958 * 15 14 13 17 17 C 1.54269 * 104.31584 * 156.32037 * 16 15 14 18 18 C 1.53871 * 106.59800 * 336.32427 * 17 16 15 19 19 C 1.54272 * 106.59949 * 359.97438 * 18 17 16 20 20 C 1.52999 * 117.50094 * 325.67058 * 14 13 11 21 21 C 1.52999 * 117.50209 * 34.33358 * 14 13 11 22 22 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 60.00263 * 10 9 7 24 24 H 1.09000 * 109.47033 * 299.99758 * 10 9 7 25 25 H 1.09003 * 110.81907 * 179.85392 * 15 14 13 26 26 H 1.08995 * 110.48969 * 37.57472 * 16 15 14 27 27 H 1.09001 * 110.48310 * 275.06425 * 16 15 14 28 28 H 1.09005 * 110.03002 * 95.60416 * 17 16 15 29 29 H 1.08999 * 110.03114 * 217.03616 * 17 16 15 30 30 H 1.08994 * 110.03221 * 119.28328 * 18 17 16 31 31 H 1.09002 * 110.03019 * 240.71299 * 18 17 16 32 32 H 1.08997 * 110.48494 * 142.29017 * 19 18 17 33 33 H 1.08997 * 110.48537 * 264.79896 * 19 18 17 34 34 H 1.09001 * 117.50020 * 214.99914 * 20 14 13 35 35 H 1.08998 * 117.49680 * 0.02829 * 20 14 13 36 36 H 1.09005 * 117.49309 * 359.97362 * 21 14 13 37 37 H 1.09001 * 117.50034 * 144.97112 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7722 -1.2020 -0.0012 10 6 4.0865 -2.9845 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3411 -2.2998 -0.0005 13 8 6.0438 -4.4896 -0.0001 14 6 7.4864 -4.6532 -0.0006 15 6 7.9866 -6.0992 0.0009 16 6 7.4172 -6.8758 1.2139 17 6 7.4713 -8.3550 0.7794 18 6 7.4660 -8.3616 -0.7593 19 6 7.4081 -6.8861 -1.2061 20 6 8.3144 -3.6198 -0.7671 21 6 8.3151 -3.6187 0.7637 22 1 -0.4850 0.8400 0.0004 23 1 3.6433 -3.4317 -0.8906 24 1 3.6440 -3.4313 0.8893 25 1 9.0761 -6.1323 -0.0022 26 1 6.3887 -6.5737 1.4117 27 1 8.0375 -6.7142 2.0955 28 1 8.3841 -8.8203 1.1516 29 1 6.5990 -8.8876 1.1581 30 1 8.3761 -8.8301 -1.1338 31 1 6.5910 -8.8974 -1.1273 32 1 8.0240 -6.7314 -2.0920 33 1 6.3784 -6.5869 -1.4015 34 1 9.2154 -3.9700 -1.2707 35 1 7.7760 -2.8168 -1.2706 36 1 7.7771 -2.8150 1.2665 37 1 9.2163 -3.9684 1.2674 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848016511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:55 Heat of formation + Delta-G solvation = -64.255745 kcal Electronic energy + Delta-G solvation = -18550.299762 eV Core-core repulsion = 15612.699380 eV Total energy + Delta-G solvation = -2937.600382 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92694 -38.38339 -36.23087 -34.90349 -32.50588 -29.73269 -28.94282 -28.83027 -25.70254 -22.98138 -22.54383 -21.19880 -20.28088 -19.44220 -17.91606 -16.76625 -16.59640 -15.95914 -15.86805 -15.08241 -14.81635 -14.33736 -13.92581 -13.60881 -13.48969 -13.15234 -12.89592 -12.72178 -12.39458 -11.93580 -11.44413 -11.35287 -11.34515 -11.24522 -11.08158 -10.96165 -10.88324 -10.73630 -10.56158 -10.31175 -9.93139 -9.71860 -9.36579 -9.06869 -8.63356 -7.03600 -6.34823 -4.09106 2.37043 2.45944 3.06507 3.28005 3.43920 3.49876 3.67303 4.25339 4.27714 4.42371 4.49337 4.55999 4.71158 4.91322 4.96568 5.04018 5.11230 5.29816 5.34032 5.40302 5.47815 5.53406 5.62975 5.66246 5.68638 5.77289 5.77929 5.90418 5.95053 6.07395 6.20199 6.21596 6.24593 6.28082 6.63724 7.88049 8.06585 8.36790 9.10217 10.74290 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.004145 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.314486 B = 6754.054582 C = 7245.019548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.098 3.902 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.091 0.909 9 S -0.138 6.138 10 C -0.100 4.100 11 C 0.476 3.524 12 O -0.483 6.483 13 O -0.318 6.318 14 C 0.052 3.948 15 C -0.040 4.040 16 C -0.119 4.119 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.186 4.186 21 C -0.186 4.186 22 H 0.272 0.728 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.663 -14.531 0.088 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.111 4.111 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.109 0.891 9 S 0.089 5.911 10 C -0.248 4.248 11 C 0.318 3.682 12 O -0.369 6.369 13 O -0.235 6.235 14 C 0.015 3.985 15 C -0.058 4.058 16 C -0.157 4.157 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.223 4.223 21 C -0.223 4.223 22 H 0.082 0.918 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.467 -13.306 0.091 21.958 hybrid contribution -0.729 -0.136 -0.031 0.742 sum 16.738 -13.442 0.060 21.468 Atomic orbital electron populations 1.69932 1.05884 1.27880 1.47616 1.24691 0.94451 0.98922 0.93077 0.86750 0.81847 0.83335 0.79981 1.19126 1.19777 1.15980 1.22267 0.87729 0.97762 1.59303 0.89078 1.84767 1.10050 0.98772 1.97556 1.23032 0.89918 1.04594 1.07273 1.23271 0.91939 0.80506 0.72484 1.90608 1.58097 1.44285 1.43945 1.86406 1.22741 1.30583 1.83777 1.22550 0.76477 0.92718 1.06798 1.21697 0.99192 0.88305 0.96605 1.22385 1.02217 0.94139 0.96924 1.22128 1.01669 0.96700 0.95693 1.22126 1.01670 0.96736 0.95674 1.22449 1.02169 0.94084 0.96924 1.23679 1.01540 1.01739 0.95360 1.23682 1.01533 1.01732 0.95379 0.91804 0.87285 0.87248 0.88824 0.90477 0.91669 0.92047 0.91720 0.92043 0.91723 0.91673 0.90464 0.88686 0.86498 0.86485 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.13 13.97 55.49 0.78 -25.35 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.32 27.74 -169.99 -4.71 16.61 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 9 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 10 C -0.10 -1.95 6.27 36.01 0.23 -1.73 16 11 C 0.48 8.60 7.63 36.01 0.27 8.88 16 12 O -0.48 -9.54 10.61 -18.75 -0.20 -9.74 16 13 O -0.32 -4.96 9.36 -39.27 -0.37 -5.33 16 14 C 0.05 0.68 2.42 -90.62 -0.22 0.46 16 15 C -0.04 -0.40 2.88 -88.42 -0.25 -0.66 16 16 C -0.12 -1.15 6.25 -25.07 -0.16 -1.31 16 17 C -0.12 -1.02 6.80 -25.61 -0.17 -1.19 16 18 C -0.12 -1.02 6.80 -25.61 -0.17 -1.19 16 19 C -0.12 -1.15 6.27 -24.86 -0.16 -1.31 16 20 C -0.19 -2.45 9.38 -26.69 -0.25 -2.70 16 21 C -0.19 -2.45 9.38 -26.69 -0.25 -2.70 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 24 H 0.11 2.01 8.14 -51.92 -0.42 1.59 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.87 7.58 -51.93 -0.39 0.48 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.12 1.85 6.18 -51.93 -0.32 1.53 16 36 H 0.12 1.85 6.18 -51.93 -0.32 1.53 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -30.39 314.23 -8.34 -38.73 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.66 Total: 0.96 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.92 Total: -15.24 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.78 Total: -25.35 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.57 Total: -15.06 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.39 -8.34 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848016511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.527 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds