Wall clock time and date at job start Mon Mar 30 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48503 * 109.47115 * 270.00749 * 3 2 1 5 5 H 1.48507 * 109.46985 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.47052 * 150.00042 * 3 2 1 7 7 C 1.38801 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99611 * 359.97438 * 7 2 1 9 9 S 1.76192 * 119.99931 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46995 * 180.02562 * 10 9 7 12 12 O 1.20829 * 120.00358 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.45191 * 117.00115 * 179.97438 * 13 11 10 15 15 C 1.53004 * 115.54891 * 179.97438 * 14 13 11 16 16 C 1.54883 * 110.76024 * 303.19958 * 15 14 13 17 17 C 1.54269 * 104.31584 * 156.32037 * 16 15 14 18 18 C 1.53871 * 106.59800 * 336.32427 * 17 16 15 19 19 C 1.54272 * 106.59949 * 359.97438 * 18 17 16 20 20 C 1.52999 * 117.50094 * 325.67058 * 14 13 11 21 21 C 1.52999 * 117.50209 * 34.33358 * 14 13 11 22 22 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 60.00263 * 10 9 7 24 24 H 1.09000 * 109.47033 * 299.99758 * 10 9 7 25 25 H 1.09003 * 110.81907 * 179.85392 * 15 14 13 26 26 H 1.08995 * 110.48969 * 37.57472 * 16 15 14 27 27 H 1.09001 * 110.48310 * 275.06425 * 16 15 14 28 28 H 1.09005 * 110.03002 * 95.60416 * 17 16 15 29 29 H 1.08999 * 110.03114 * 217.03616 * 17 16 15 30 30 H 1.08994 * 110.03221 * 119.28328 * 18 17 16 31 31 H 1.09002 * 110.03019 * 240.71299 * 18 17 16 32 32 H 1.08997 * 110.48494 * 142.29017 * 19 18 17 33 33 H 1.08997 * 110.48537 * 264.79896 * 19 18 17 34 34 H 1.09001 * 117.50020 * 214.99914 * 20 14 13 35 35 H 1.08998 * 117.49680 * 0.02829 * 20 14 13 36 36 H 1.09005 * 117.49309 * 359.97362 * 21 14 13 37 37 H 1.09001 * 117.50034 * 144.97112 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7722 -1.2020 -0.0012 10 6 4.0865 -2.9845 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3411 -2.2998 -0.0005 13 8 6.0438 -4.4896 -0.0001 14 6 7.4864 -4.6532 -0.0006 15 6 7.9866 -6.0992 0.0009 16 6 7.4172 -6.8758 1.2139 17 6 7.4713 -8.3550 0.7794 18 6 7.4660 -8.3616 -0.7593 19 6 7.4081 -6.8861 -1.2061 20 6 8.3144 -3.6198 -0.7671 21 6 8.3151 -3.6187 0.7637 22 1 -0.4850 0.8400 0.0004 23 1 3.6433 -3.4317 -0.8906 24 1 3.6440 -3.4313 0.8893 25 1 9.0761 -6.1323 -0.0022 26 1 6.3887 -6.5737 1.4117 27 1 8.0375 -6.7142 2.0955 28 1 8.3841 -8.8203 1.1516 29 1 6.5990 -8.8876 1.1581 30 1 8.3761 -8.8301 -1.1338 31 1 6.5910 -8.8974 -1.1273 32 1 8.0240 -6.7314 -2.0920 33 1 6.3784 -6.5869 -1.4015 34 1 9.2154 -3.9700 -1.2707 35 1 7.7760 -2.8168 -1.2706 36 1 7.7771 -2.8150 1.2665 37 1 9.2163 -3.9684 1.2674 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848016511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:55 Heat of formation + Delta-G solvation = -80.054456 kcal Electronic energy + Delta-G solvation = -18550.984845 eV Core-core repulsion = 15612.699380 eV Total energy + Delta-G solvation = -2938.285465 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.20798 -39.34593 -37.39664 -36.04653 -34.71515 -31.31849 -29.69904 -29.53968 -27.92222 -24.16420 -23.56891 -22.23833 -20.94909 -20.62640 -19.89561 -18.20686 -17.71778 -17.29289 -17.14463 -16.70182 -16.10381 -15.81982 -15.27256 -14.90056 -14.57142 -14.39922 -14.23674 -13.94496 -13.72173 -13.38612 -13.05611 -12.91525 -12.74589 -12.25241 -12.09365 -12.04832 -11.93089 -11.91468 -11.63318 -11.46216 -11.20582 -11.19869 -10.98016 -10.66072 -10.43672 -9.08784 -8.54823 -6.28578 0.73426 1.00953 1.30101 1.33618 1.47436 1.79410 2.21525 2.61114 2.65970 2.83377 3.27346 3.51597 3.64788 3.68723 3.95381 4.01058 4.06534 4.19073 4.35131 4.56010 4.61302 4.69400 4.69977 4.71186 4.79240 4.87235 4.99314 5.05253 5.15019 5.20343 5.29575 5.31154 5.36107 5.49908 5.54982 5.67273 6.08841 6.65599 6.88940 8.57748 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.004145 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.314486 B = 6754.054582 C = 7245.019548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.048 3.952 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.234 1.234 7 C -0.535 4.535 8 H 0.063 0.937 9 S -0.154 6.154 10 C -0.092 4.092 11 C 0.484 3.516 12 O -0.501 6.501 13 O -0.316 6.316 14 C 0.044 3.956 15 C -0.035 4.035 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.186 4.186 21 C -0.186 4.186 22 H 0.279 0.721 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.166 -15.552 0.103 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.158 1.158 7 C -0.682 4.682 8 H 0.081 0.919 9 S 0.072 5.928 10 C -0.240 4.240 11 C 0.326 3.674 12 O -0.389 6.389 13 O -0.233 6.233 14 C 0.007 3.993 15 C -0.053 4.053 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.223 4.223 21 C -0.223 4.223 22 H 0.088 0.912 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.138 0.862 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 19.967 -14.348 0.106 24.588 hybrid contribution -1.477 0.038 -0.040 1.478 sum 18.489 -14.311 0.066 23.381 Atomic orbital electron populations 1.70012 1.07373 1.29203 1.48633 1.25557 0.95270 1.02281 0.92653 0.85875 0.80714 0.79468 0.80354 1.18514 1.18177 1.15830 1.22423 0.89936 0.96908 1.58964 0.91875 1.84560 1.06916 1.03633 1.97667 1.22950 0.91733 1.00787 1.08505 1.22828 0.91051 0.81156 0.72347 1.90622 1.58332 1.45061 1.44877 1.86376 1.25056 1.28685 1.83165 1.23075 0.74667 0.94606 1.06943 1.21838 1.00503 0.86048 0.96900 1.22391 1.00996 0.95185 0.97318 1.22127 1.02521 0.95591 0.95677 1.22126 1.02518 0.95639 0.95650 1.22455 1.00951 0.95119 0.97331 1.23671 1.02354 1.00898 0.95378 1.23673 1.02348 1.00889 0.95407 0.91196 0.86120 0.86091 0.86151 0.92828 0.90622 0.90326 0.91876 0.90323 0.91878 0.90623 0.92804 0.85538 0.89476 0.89478 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.28 13.97 21.65 0.30 -54.98 16 2 C 0.05 2.80 5.50 84.86 0.47 3.27 16 3 Si 0.91 44.00 27.74 68.60 1.90 45.90 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.23 -11.15 6.74 99.48 0.67 -10.48 16 7 C -0.53 -30.87 10.04 67.95 0.68 -30.19 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.15 -7.61 18.55 -56.49 -1.05 -8.66 16 10 C -0.09 -3.57 6.27 71.24 0.45 -3.12 16 11 C 0.48 17.41 7.63 71.24 0.54 17.95 16 12 O -0.50 -19.82 10.61 21.95 0.23 -19.59 16 13 O -0.32 -9.70 9.36 -51.46 -0.48 -10.18 16 14 C 0.04 1.08 2.42 -10.79 -0.03 1.05 16 15 C -0.03 -0.61 2.88 -9.37 -0.03 -0.63 16 16 C -0.12 -2.09 6.25 31.67 0.20 -1.89 16 17 C -0.12 -1.66 6.80 31.32 0.21 -1.45 16 18 C -0.12 -1.66 6.80 31.32 0.21 -1.45 16 19 C -0.12 -2.08 6.27 31.80 0.20 -1.88 16 20 C -0.19 -4.57 9.38 30.62 0.29 -4.29 16 21 C -0.19 -4.58 9.38 30.62 0.29 -4.29 16 22 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 23 H 0.12 4.43 8.14 -2.40 -0.02 4.41 16 24 H 0.12 4.44 8.14 -2.40 -0.02 4.42 16 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.17 7.58 -2.39 -0.02 1.15 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.17 7.60 -2.39 -0.02 1.15 16 34 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 2.72 6.18 -2.39 -0.01 2.71 16 36 H 0.09 2.72 6.18 -2.38 -0.01 2.71 16 37 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -66.00 314.23 5.40 -60.60 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.01 Total: 13.82 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 3.48 Total: -26.92 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.30 Total: -54.98 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.25 Total: -29.76 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.05 Total: -8.66 kcal Total: -66.00 5.40 -60.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848016511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.453 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds