Wall clock time and date at job start Mon Mar 30 2020 01:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00530 * 2 1 4 4 H 1.48502 * 109.47317 * 269.99916 * 3 2 1 5 5 H 1.48504 * 109.47206 * 29.99492 * 3 2 1 6 6 H 1.48505 * 109.47229 * 149.99358 * 3 2 1 7 7 C 1.38800 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99945 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00027 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00036 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46710 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46736 * 180.02562 * 12 11 10 14 14 C 1.34229 * 117.00136 * 180.02562 * 13 12 11 15 15 O 1.20831 * 119.99478 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00427 * 179.97438 * 14 13 12 17 17 C 1.53886 * 113.58964 * 179.97438 * 16 14 13 18 18 C 1.53261 * 86.88099 * 139.57203 * 17 16 14 19 19 C 1.52463 * 128.58249 * 114.94486 * 18 17 16 20 20 C 1.52594 * 128.58191 * 194.84462 * 18 17 16 21 21 C 1.53258 * 87.69487 * 334.91900 * 18 17 16 22 22 H 0.97006 * 119.99497 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47062 * 59.99941 * 10 9 7 24 24 H 1.08993 * 109.47094 * 299.99508 * 10 9 7 25 25 H 1.08998 * 109.46848 * 60.00363 * 11 10 9 26 26 H 1.08993 * 109.47284 * 299.99943 * 11 10 9 27 27 H 1.08998 * 109.46942 * 60.00697 * 12 11 10 28 28 H 1.08993 * 109.47427 * 300.00133 * 12 11 10 29 29 H 1.09000 * 112.82683 * 48.87843 * 16 14 13 30 30 H 1.08996 * 113.64912 * 25.07926 * 17 16 14 31 31 H 1.08993 * 113.73163 * 254.07640 * 17 16 14 32 32 H 1.09002 * 117.51344 * 225.05060 * 19 18 17 33 33 H 1.08998 * 117.51392 * 10.11387 * 19 18 17 34 34 H 1.09004 * 117.53725 * 134.99156 * 20 18 17 35 35 H 1.09004 * 117.50465 * 349.86084 * 20 18 17 36 36 H 1.08991 * 113.64440 * 139.58056 * 21 18 17 37 37 H 1.08997 * 113.64300 * 270.58573 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4400 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2023 0.0012 10 6 4.0863 -2.9848 0.0009 11 6 5.5955 -3.2366 0.0008 12 6 5.8610 -4.7435 0.0012 13 8 7.2932 -4.9825 0.0017 14 6 7.6975 -6.2624 0.0016 15 8 6.8815 -7.1536 0.0016 16 6 9.1688 -6.5880 0.0015 17 6 9.4654 -8.0980 0.0020 18 6 10.5923 -7.7920 -0.9907 19 6 12.0963 -7.9553 -0.8016 20 6 11.3663 -8.7608 -1.8800 21 6 9.8106 -6.5378 -1.3963 22 1 -0.4850 0.8401 -0.0004 23 1 3.6437 -3.4316 -0.8893 24 1 3.6431 -3.4319 0.8906 25 1 6.0385 -2.7898 0.8909 26 1 6.0384 -2.7895 -0.8891 27 1 5.4180 -5.1906 -0.8886 28 1 5.4182 -5.1902 0.8913 29 1 9.7245 -6.0343 0.7584 30 1 8.6623 -8.7015 -0.4209 31 1 9.8187 -8.4753 0.9616 32 1 12.7370 -7.1374 -1.1313 33 1 12.4372 -8.4922 0.0836 34 1 11.5268 -8.4727 -2.9189 35 1 11.2264 -9.8274 -1.7036 36 1 10.4405 -5.6630 -1.5569 37 1 9.1034 -6.7070 -2.2083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850216020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:55 Heat of formation + Delta-G solvation = -58.251207 kcal Electronic energy + Delta-G solvation = -17364.540843 eV Core-core repulsion = 14427.200838 eV Total energy + Delta-G solvation = -2937.340006 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99737 -39.30325 -36.70842 -34.09866 -33.53939 -32.46426 -27.25584 -26.20815 -25.73097 -24.85170 -22.87071 -21.45763 -20.66857 -18.79749 -17.89287 -17.37478 -16.79023 -16.57171 -15.65820 -15.61002 -15.02234 -14.68975 -14.53939 -13.68726 -13.05105 -12.98657 -12.85254 -12.69775 -12.59834 -12.29444 -11.95851 -11.90310 -11.53554 -11.21892 -11.10140 -10.98736 -10.87702 -10.75770 -10.50712 -10.36171 -10.21211 -10.03524 -9.82647 -9.03296 -8.62317 -6.99086 -6.30720 -4.04094 2.06996 2.48954 3.00551 3.28390 3.33044 3.43321 3.55415 3.88358 4.08098 4.19462 4.29066 4.37457 4.46370 4.71316 4.85928 4.90963 5.03727 5.08372 5.15423 5.22644 5.25537 5.31025 5.37685 5.38564 5.43859 5.56873 5.67231 5.71842 5.72601 5.77198 5.88462 6.04988 6.32718 6.39136 6.56985 7.67646 7.92931 8.42240 9.14616 10.78672 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.056520 B = 0.002603 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.277453 B =10752.615641 C =11052.379427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.504 4.504 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.071 3.929 13 O -0.354 6.354 14 C 0.469 3.531 15 O -0.509 6.509 16 C -0.105 4.105 17 C -0.078 4.078 18 C -0.166 4.166 19 C -0.149 4.149 20 C -0.163 4.163 21 C -0.080 4.080 22 H 0.271 0.729 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.561 -14.729 -1.382 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.021 5.979 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.004 4.004 13 O -0.270 6.270 14 C 0.312 3.688 15 O -0.397 6.397 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.166 4.166 19 C -0.186 4.186 20 C -0.200 4.200 21 C -0.117 4.117 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.806 -13.977 -1.376 27.640 hybrid contribution -1.011 -0.241 0.014 1.039 sum 22.796 -14.218 -1.362 26.901 Atomic orbital electron populations 1.69940 1.05916 1.27755 1.48079 1.24798 0.94534 0.99046 0.93311 0.86666 0.81734 0.83178 0.79736 1.19327 1.20045 1.16138 1.22121 0.86953 0.97511 1.58616 0.89302 1.84161 1.11829 1.04336 1.97555 1.22949 0.96036 1.00056 1.04220 1.21326 0.95890 0.92330 1.04376 1.23228 0.76462 0.97960 1.02752 1.86488 1.28585 1.28629 1.83315 1.23506 0.92193 0.80915 0.72234 1.90662 1.55545 1.48107 1.45375 1.22379 0.88937 0.99553 1.01532 1.22485 0.96632 0.93476 0.98969 1.22120 0.93111 0.99123 1.02274 1.22818 0.92055 1.02759 1.00966 1.22839 1.03445 0.97398 0.96338 1.22416 0.97861 0.96829 0.94595 0.91923 0.91029 0.90978 0.90272 0.90279 0.91061 0.91036 0.85608 0.88091 0.90398 0.88368 0.88431 0.88498 0.88519 0.89840 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 2 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.41 27.74 -169.99 -4.71 16.70 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 7 C -0.50 -14.60 10.04 30.94 0.31 -14.29 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -4.99 19.41 -107.50 -2.09 -7.08 16 10 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 11 C -0.10 -1.55 5.60 -26.73 -0.15 -1.70 16 12 C 0.07 1.00 5.47 37.16 0.20 1.20 16 13 O -0.35 -4.75 10.22 -39.26 -0.40 -5.15 16 14 C 0.47 5.88 7.48 36.00 0.27 6.15 16 15 O -0.51 -7.76 15.64 -18.75 -0.29 -8.06 16 16 C -0.10 -0.93 4.26 -90.85 -0.39 -1.31 16 17 C -0.08 -0.64 7.42 -26.13 -0.19 -0.83 16 18 C -0.17 -1.17 3.09 -154.73 -0.48 -1.65 16 19 C -0.15 -0.84 10.53 -26.94 -0.28 -1.13 16 20 C -0.16 -1.00 10.54 -26.87 -0.28 -1.28 16 21 C -0.08 -0.62 7.65 -26.13 -0.20 -0.81 16 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 24 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.96 7.43 -51.93 -0.39 0.57 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -31.88 328.86 -8.72 -40.60 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.88 Total: -1.59 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.08 Total: -14.48 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.78 Total: -25.90 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.69 Total: -13.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.09 Total: -7.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.88 -8.72 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850216020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.647 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds