Wall clock time and date at job start Mon Mar 30 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00530 * 2 1 4 4 H 1.48502 * 109.47317 * 269.99916 * 3 2 1 5 5 H 1.48504 * 109.47206 * 29.99492 * 3 2 1 6 6 H 1.48505 * 109.47229 * 149.99358 * 3 2 1 7 7 C 1.38800 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99945 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00027 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00036 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46710 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46736 * 180.02562 * 12 11 10 14 14 C 1.34229 * 117.00136 * 180.02562 * 13 12 11 15 15 O 1.20831 * 119.99478 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00427 * 179.97438 * 14 13 12 17 17 C 1.53886 * 113.58964 * 179.97438 * 16 14 13 18 18 C 1.53261 * 86.88099 * 139.57203 * 17 16 14 19 19 C 1.52463 * 128.58249 * 114.94486 * 18 17 16 20 20 C 1.52594 * 128.58191 * 194.84462 * 18 17 16 21 21 C 1.53258 * 87.69487 * 334.91900 * 18 17 16 22 22 H 0.97006 * 119.99497 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47062 * 59.99941 * 10 9 7 24 24 H 1.08993 * 109.47094 * 299.99508 * 10 9 7 25 25 H 1.08998 * 109.46848 * 60.00363 * 11 10 9 26 26 H 1.08993 * 109.47284 * 299.99943 * 11 10 9 27 27 H 1.08998 * 109.46942 * 60.00697 * 12 11 10 28 28 H 1.08993 * 109.47427 * 300.00133 * 12 11 10 29 29 H 1.09000 * 112.82683 * 48.87843 * 16 14 13 30 30 H 1.08996 * 113.64912 * 25.07926 * 17 16 14 31 31 H 1.08993 * 113.73163 * 254.07640 * 17 16 14 32 32 H 1.09002 * 117.51344 * 225.05060 * 19 18 17 33 33 H 1.08998 * 117.51392 * 10.11387 * 19 18 17 34 34 H 1.09004 * 117.53725 * 134.99156 * 20 18 17 35 35 H 1.09004 * 117.50465 * 349.86084 * 20 18 17 36 36 H 1.08991 * 113.64440 * 139.58056 * 21 18 17 37 37 H 1.08997 * 113.64300 * 270.58573 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4400 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2023 0.0012 10 6 4.0863 -2.9848 0.0009 11 6 5.5955 -3.2366 0.0008 12 6 5.8610 -4.7435 0.0012 13 8 7.2932 -4.9825 0.0017 14 6 7.6975 -6.2624 0.0016 15 8 6.8815 -7.1536 0.0016 16 6 9.1688 -6.5880 0.0015 17 6 9.4654 -8.0980 0.0020 18 6 10.5923 -7.7920 -0.9907 19 6 12.0963 -7.9553 -0.8016 20 6 11.3663 -8.7608 -1.8800 21 6 9.8106 -6.5378 -1.3963 22 1 -0.4850 0.8401 -0.0004 23 1 3.6437 -3.4316 -0.8893 24 1 3.6431 -3.4319 0.8906 25 1 6.0385 -2.7898 0.8909 26 1 6.0384 -2.7895 -0.8891 27 1 5.4180 -5.1906 -0.8886 28 1 5.4182 -5.1902 0.8913 29 1 9.7245 -6.0343 0.7584 30 1 8.6623 -8.7015 -0.4209 31 1 9.8187 -8.4753 0.9616 32 1 12.7370 -7.1374 -1.1313 33 1 12.4372 -8.4922 0.0836 34 1 11.5268 -8.4727 -2.9189 35 1 11.2264 -9.8274 -1.7036 36 1 10.4405 -5.6630 -1.5569 37 1 9.1034 -6.7070 -2.2083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850216020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:54 Heat of formation + Delta-G solvation = -74.968878 kcal Electronic energy + Delta-G solvation = -17365.265776 eV Core-core repulsion = 14427.200838 eV Total energy + Delta-G solvation = -2938.064938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90042 -40.03742 -37.78715 -35.00174 -34.69834 -34.54838 -28.52684 -27.85781 -26.81589 -25.85825 -23.30552 -22.78572 -21.58971 -19.64374 -19.38617 -18.72352 -17.83481 -17.58671 -17.11269 -16.39120 -16.20263 -16.05298 -15.75922 -14.99758 -14.82231 -14.21028 -14.06227 -13.71599 -13.47940 -13.36147 -13.08681 -13.04469 -12.66165 -12.61929 -12.41211 -12.30440 -12.22540 -11.81128 -11.60300 -11.54459 -11.32014 -11.17506 -11.04715 -10.62183 -10.58147 -9.02041 -8.52982 -6.25400 1.05387 1.08990 1.32590 1.44363 1.51942 1.84692 2.24175 2.64663 2.83261 2.84985 3.30661 3.43443 3.57185 3.75408 3.80804 3.86145 3.94214 4.05641 4.12013 4.26099 4.35001 4.50299 4.63170 4.70105 4.77575 4.77783 4.83702 4.96874 4.99343 5.02868 5.08182 5.18700 5.26404 5.31456 5.42282 5.68409 6.09264 6.66195 6.90419 8.60083 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.056520 B = 0.002603 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.277453 B =10752.615641 C =11052.379427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.226 1.226 7 C -0.526 4.526 8 H 0.051 0.949 9 S -0.205 6.205 10 C -0.075 4.075 11 C -0.087 4.087 12 C 0.076 3.924 13 O -0.354 6.354 14 C 0.468 3.532 15 O -0.541 6.541 16 C -0.102 4.102 17 C -0.080 4.080 18 C -0.174 4.174 19 C -0.137 4.137 20 C -0.167 4.167 21 C -0.078 4.078 22 H 0.277 0.723 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.540 -14.270 -1.293 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.674 4.674 8 H 0.069 0.931 9 S 0.023 5.977 10 C -0.223 4.223 11 C -0.125 4.125 12 C 0.001 3.999 13 O -0.270 6.270 14 C 0.312 3.688 15 O -0.431 6.431 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.174 4.174 19 C -0.174 4.174 20 C -0.204 4.204 21 C -0.116 4.116 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.796 -13.528 -1.287 30.045 hybrid contribution -1.945 -0.547 -0.027 2.020 sum 24.852 -14.075 -1.315 28.591 Atomic orbital electron populations 1.70044 1.07717 1.29181 1.49035 1.25819 0.95465 1.02921 0.92674 0.85691 0.80797 0.78413 0.80302 1.18502 1.18762 1.14961 1.22351 0.90104 0.96328 1.58583 0.93120 1.83792 1.07470 1.08849 1.97590 1.22978 0.98945 0.96205 1.04173 1.21143 0.92827 0.93463 1.05095 1.23013 0.77321 0.96792 1.02815 1.86488 1.27746 1.29410 1.83398 1.24324 0.93525 0.80038 0.70878 1.90652 1.56732 1.48760 1.46934 1.22608 0.86283 1.00248 1.02985 1.22455 0.96652 0.92765 0.99866 1.22058 0.93758 0.99064 1.02549 1.22930 0.90803 1.02696 1.00933 1.22938 1.03179 0.97510 0.96776 1.22414 0.97796 0.97894 0.93448 0.91355 0.91149 0.91093 0.89545 0.89541 0.91115 0.91051 0.83418 0.90041 0.89252 0.87327 0.87524 0.88060 0.88269 0.88397 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.87 13.97 21.65 0.30 -56.56 16 2 C 0.04 2.11 5.50 84.86 0.47 2.58 16 3 Si 0.93 43.74 27.74 68.60 1.90 45.64 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.23 -10.19 6.74 99.48 0.67 -9.52 16 7 C -0.53 -31.01 10.04 67.95 0.68 -30.32 16 8 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 9 S -0.21 -9.73 19.41 -56.49 -1.10 -10.83 16 10 C -0.07 -2.80 5.67 71.98 0.41 -2.39 16 11 C -0.09 -2.52 5.60 30.60 0.17 -2.35 16 12 C 0.08 2.05 5.47 71.98 0.39 2.44 16 13 O -0.35 -8.95 10.22 -51.41 -0.53 -9.47 16 14 C 0.47 11.26 7.48 71.23 0.53 11.80 16 15 O -0.54 -16.43 15.64 21.95 0.34 -16.08 16 16 C -0.10 -1.63 4.26 -10.94 -0.05 -1.67 16 17 C -0.08 -1.20 7.42 30.98 0.23 -0.97 16 18 C -0.17 -2.12 3.09 -52.32 -0.16 -2.28 16 19 C -0.14 -1.17 10.53 30.46 0.32 -0.85 16 20 C -0.17 -1.72 10.54 30.50 0.32 -1.39 16 21 C -0.08 -1.07 7.65 30.98 0.24 -0.83 16 22 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 23 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 24 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 26 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 28 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 29 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.54 7.43 -2.39 -0.02 1.53 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 Total: -1.00 -68.86 328.86 5.48 -63.38 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.00 Total: 10.17 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.56 Total: -26.25 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.30 Total: -56.56 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.18 Total: -25.56 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Atomic # 16 Polarization: -9.73 SS G_CDS: -1.10 Total: -10.83 kcal Total: -68.86 5.48 -63.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850216020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.590 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds