Wall clock time and date at job start Mon Mar 30 2020 01:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99697 * 2 1 4 4 H 1.48498 * 109.47118 * 240.00212 * 3 2 1 5 5 H 1.48500 * 109.47340 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47097 * 120.00601 * 3 2 1 7 7 C 1.37873 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47165 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47427 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47428 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00177 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00038 * 180.02562 * 13 12 11 16 16 N 1.40104 * 119.99856 * 185.29522 * 15 13 12 17 17 C 1.36369 * 125.96408 * 255.06081 * 16 15 13 18 18 O 1.35624 * 125.98987 * 359.94050 * 17 16 15 19 19 N 1.30913 * 108.02012 * 180.20770 * 17 16 15 20 20 N 1.40108 * 107.94124 * 359.64695 * 19 17 16 21 21 C 1.30912 * 107.94319 * 0.35897 * 20 19 17 22 22 O 1.35621 * 125.99420 * 179.75195 * 21 20 19 23 23 H 0.96999 * 120.00432 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47266 * 59.99298 * 9 7 2 25 25 H 1.09008 * 109.46625 * 299.99623 * 9 7 2 26 26 H 1.08994 * 109.47610 * 59.99470 * 10 9 7 27 27 H 1.09001 * 109.47281 * 299.99627 * 10 9 7 28 28 H 1.09006 * 109.47111 * 59.99903 * 11 10 9 29 29 H 1.09001 * 109.47117 * 300.00217 * 11 10 9 30 30 H 1.09006 * 109.46675 * 60.00101 * 12 11 10 31 31 H 1.09000 * 109.47165 * 300.00830 * 12 11 10 32 32 H 0.96998 * 120.00347 * 5.29642 * 15 13 12 33 33 H 0.96697 * 114.00049 * 90.00339 * 18 17 16 34 34 H 0.96700 * 114.00064 * 267.72104 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 6 2.4747 -6.1500 -0.0024 13 6 1.7213 -7.4551 -0.0036 14 8 0.5084 -7.4552 -0.0045 15 7 2.3952 -8.6223 -0.0036 16 7 1.6993 -9.8330 -0.1166 17 6 1.4613 -10.7173 0.8938 18 8 1.8577 -10.5794 2.1835 19 7 0.7881 -11.7254 0.3995 20 7 0.5808 -11.4789 -0.9640 21 6 1.1413 -10.3325 -1.2564 22 8 1.1638 -9.7450 -2.4785 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8918 25 1 0.6242 -2.5575 0.8881 26 1 2.8714 -3.6047 0.8889 27 1 2.8727 -3.6039 -0.8910 28 1 0.8541 -5.0447 -0.8923 29 1 0.8534 -5.0450 0.8877 30 1 3.1013 -6.0925 0.8877 31 1 3.1015 -6.0918 -0.8922 32 1 3.3620 -8.6241 0.0747 33 1 1.2172 -10.1218 2.7451 34 1 1.9438 -9.9645 -3.0061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854610261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:44 Heat of formation + Delta-G solvation = -41.903257 kcal Electronic energy + Delta-G solvation = -19901.433030 eV Core-core repulsion = 16450.801462 eV Total energy + Delta-G solvation = -3450.631569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.55929 -40.91047 -39.29650 -38.21568 -36.92115 -36.50057 -34.66049 -32.56177 -31.01115 -30.93135 -27.52375 -24.77277 -24.05808 -23.37391 -22.22921 -21.61585 -20.86479 -19.98787 -18.83937 -18.49229 -18.34964 -17.33086 -16.97423 -16.64432 -16.51771 -15.63407 -15.58898 -14.87204 -14.53976 -14.11878 -13.86573 -13.67494 -13.56989 -13.37694 -13.00277 -12.79822 -12.39378 -12.34428 -12.20048 -12.15973 -11.92375 -11.42312 -11.36598 -11.25201 -10.99431 -10.90578 -10.75281 -10.53341 -8.18021 -6.29988 -0.22981 0.33042 0.82109 1.20284 1.41658 1.44848 1.52713 1.65862 2.00580 2.42522 3.15264 3.19702 3.63698 3.73611 3.95209 4.12616 4.19657 4.30826 4.59509 4.67592 4.80841 4.86002 5.17171 5.31430 5.34272 5.40153 5.58348 5.80071 5.87479 5.90230 6.07211 6.25310 6.26536 6.53639 6.89293 6.90535 7.40097 8.93887 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.043765 B = 0.002889 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.631600 B = 9691.092907 C = 9894.756308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.100 4.100 12 C -0.109 4.109 13 C 0.523 3.477 14 O -0.558 6.558 15 N -0.506 5.506 16 N -0.320 5.320 17 C 0.426 3.574 18 O -0.427 6.427 19 N -0.316 5.316 20 N -0.319 5.319 21 C 0.432 3.568 22 O -0.433 6.433 23 H 0.262 0.738 24 H -0.017 1.017 25 H -0.016 1.016 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.452 0.548 33 H 0.435 0.565 34 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.015 -19.983 0.226 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.138 4.138 12 C -0.150 4.150 13 C 0.312 3.688 14 O -0.432 6.432 15 N -0.264 5.264 16 N -0.129 5.129 17 C 0.115 3.885 18 O -0.230 6.230 19 N -0.160 5.160 20 N -0.164 5.164 21 C 0.122 3.878 22 O -0.237 6.237 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.300 0.700 33 H 0.298 0.702 34 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 10.224 -21.264 0.071 23.594 hybrid contribution 0.771 2.322 0.156 2.452 sum 10.995 -18.941 0.227 21.902 Atomic orbital electron populations 1.70121 1.08090 1.27771 1.51968 1.26074 0.95718 1.03708 0.94893 0.85475 0.78182 0.77865 0.79374 1.18887 1.21391 1.18857 1.21756 0.93847 0.92210 1.50096 0.91328 1.19069 0.94790 0.93904 0.94282 1.21433 0.97752 0.92200 1.01859 1.21312 0.97565 0.93567 1.01385 1.21730 0.98800 0.85750 1.08729 1.22286 0.88416 0.85015 0.73051 1.90823 1.16570 1.87102 1.48686 1.45604 1.09253 0.92931 1.78576 1.46349 1.45543 1.11781 1.09259 1.21581 0.95066 0.86909 0.84929 1.84887 1.47272 1.79875 1.10996 1.78449 1.17278 1.19643 1.00658 1.78466 1.22759 1.10681 1.04484 1.21561 0.94154 0.89083 0.83023 1.85009 1.49768 1.69379 1.19516 0.92929 0.99850 0.99761 0.91482 0.91604 0.93815 0.93553 0.84188 0.84380 0.70048 0.70151 0.69829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 2 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 3 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 0.86 4.97 29.85 0.15 1.01 16 10 C -0.09 -3.37 5.15 30.59 0.16 -3.22 16 11 C -0.10 -2.99 4.50 30.59 0.14 -2.85 16 12 C -0.11 -1.76 5.70 29.85 0.17 -1.59 16 13 C 0.52 10.54 7.91 87.66 0.69 11.23 16 14 O -0.56 -18.15 16.32 -3.05 -0.05 -18.20 16 15 N -0.51 -6.64 6.26 -173.53 -1.09 -7.73 16 16 N -0.32 -6.13 3.09 -423.57 -1.31 -7.44 16 17 C 0.43 8.68 9.38 179.71 1.69 10.37 16 18 O -0.43 -5.78 13.64 -89.36 -1.22 -7.00 16 19 N -0.32 -8.30 12.72 -173.66 -2.21 -10.51 16 20 N -0.32 -8.65 12.72 -173.66 -2.21 -10.86 16 21 C 0.43 9.56 9.34 179.71 1.68 11.24 16 22 O -0.43 -7.40 13.64 -89.33 -1.22 -8.62 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H -0.02 -0.92 8.14 -2.38 -0.02 -0.93 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.04 1.50 8.10 -2.38 -0.02 1.48 16 29 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 30 H 0.14 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.45 1.83 8.83 -213.32 -1.88 -0.05 16 33 H 0.44 2.36 9.06 -74.06 -0.67 1.69 16 34 H 0.44 1.60 9.06 -74.06 -0.67 0.93 16 Total: -1.00 -86.96 312.14 -3.67 -90.63 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -2.05 Total: -4.68 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.37 Total: -3.45 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -6.53 Total: -94.08 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -2.49 Total: -33.82 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -86.96 -3.67 -90.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854610261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.728 kcal (2) G-P(sol) polarization free energy of solvation -86.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds