Wall clock time and date at job start Mon Mar 30 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 13 13 C 1.34218 * 117.00377 * 89.99417 * 12 2 1 14 14 O 1.20826 * 119.99938 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00192 * 179.97438 * 13 12 2 16 16 N 1.46506 * 109.47491 * 180.02562 * 15 13 12 17 17 C 1.47307 * 126.68978 * 89.99838 * 16 15 13 18 18 C 1.51586 * 103.59039 * 179.97438 * 17 16 15 19 19 O 1.21235 * 127.15813 * 180.02562 * 18 17 16 20 20 N 1.34765 * 105.68651 * 0.02562 * 18 17 16 21 21 C 1.46500 * 124.17853 * 180.02562 * 20 18 17 22 22 C 1.33793 * 111.64241 * 359.76566 * 20 18 17 23 23 O 1.21544 * 123.76896 * 180.24845 * 22 20 18 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47472 * 300.00315 * 15 13 12 29 29 H 1.09005 * 109.47098 * 60.00468 * 15 13 12 30 30 H 1.09001 * 110.60039 * 298.49302 * 17 16 15 31 31 H 1.08998 * 110.59997 * 61.44520 * 17 16 15 32 32 H 1.08997 * 109.47393 * 359.97438 * 21 20 18 33 33 H 1.09007 * 109.46593 * 119.97756 * 21 20 18 34 34 H 1.08999 * 109.47118 * 239.97164 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 8 2.0141 -0.6843 -1.1857 13 6 2.2171 0.0642 -2.2811 14 8 1.9981 1.2520 -2.2503 15 6 2.7193 -0.5767 -3.5492 16 7 2.8582 0.4443 -4.5907 17 6 4.0551 1.2545 -4.8748 18 6 3.6269 2.1266 -6.0384 19 8 4.2938 2.9600 -6.6132 20 7 2.3505 1.7829 -6.3010 21 6 1.5380 2.3836 -7.3617 22 6 1.9190 0.8212 -5.4769 23 8 0.8023 0.3435 -5.5223 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.9032 -0.5282 4.4375 28 1 3.6885 -1.0397 -3.3633 29 1 2.0105 -1.3370 -3.8775 30 1 4.3170 1.8675 -4.0123 31 1 4.8911 0.6164 -5.1611 32 1 2.1256 3.1359 -7.8876 33 1 1.2267 1.6096 -8.0633 34 1 0.6568 2.8521 -6.9232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860544197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:09 Heat of formation + Delta-G solvation = -107.924270 kcal Electronic energy + Delta-G solvation = -20879.483735 eV Core-core repulsion = 17393.696529 eV Total energy + Delta-G solvation = -3485.787206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.50915 -39.85475 -38.78271 -36.55491 -36.05082 -35.22986 -33.28670 -31.08968 -30.28193 -27.39317 -26.95300 -25.31189 -23.08058 -22.05502 -20.59747 -19.83947 -17.93885 -17.72231 -17.09070 -16.90431 -16.63039 -16.00686 -15.82659 -15.27757 -15.07699 -14.56505 -14.42632 -14.23420 -13.85568 -13.20139 -12.97392 -12.87557 -12.75440 -12.55241 -12.32594 -11.81808 -11.58355 -11.13392 -10.95032 -10.48765 -10.36419 -10.26713 -10.04909 -9.88748 -9.76500 -9.23073 -9.15769 -8.74413 -6.28357 -4.31317 1.38579 1.74361 2.58567 2.63884 2.77584 3.15325 3.27493 3.29027 3.45020 3.78559 4.21678 4.41874 4.76353 4.86923 4.99537 5.02882 5.05200 5.14603 5.20818 5.26498 5.35111 5.57514 6.03965 6.10726 6.23781 6.34666 6.54104 6.84250 6.95762 7.08458 7.26803 7.43213 7.83537 8.11754 8.46744 8.77458 9.28495 10.83571 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.004321 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.567489 B = 6478.407559 C = 6532.260301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.193 3.807 3 H 0.046 0.954 4 C -0.527 4.527 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.887 5.887 8 Si 0.879 3.121 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.263 1.263 12 O -0.338 6.338 13 C 0.432 3.568 14 O -0.513 6.513 15 C 0.160 3.840 16 N -0.611 5.611 17 C 0.063 3.937 18 C 0.528 3.472 19 O -0.475 6.475 20 N -0.579 5.579 21 C 0.089 3.911 22 C 0.706 3.294 23 O -0.535 6.535 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.270 0.730 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 2.757 -19.132 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.139 3.861 3 H 0.063 0.937 4 C -0.564 4.564 5 H 0.106 0.894 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.188 1.188 12 O -0.253 6.253 13 C 0.272 3.728 14 O -0.403 6.403 15 C 0.037 3.963 16 N -0.350 5.350 17 C -0.062 4.062 18 C 0.315 3.685 19 O -0.345 6.345 20 N -0.325 5.325 21 C -0.052 4.052 22 C 0.408 3.592 23 O -0.408 6.408 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.406 3.230 -19.155 19.574 hybrid contribution -0.740 0.983 0.425 1.302 sum 1.666 4.213 -18.730 19.270 Atomic orbital electron populations 1.22525 0.98367 1.01998 0.99880 1.20958 0.90560 0.94376 0.80187 0.93662 1.20764 1.33583 1.14923 0.87170 0.89378 1.24716 0.95576 0.96695 0.95244 1.69829 1.44609 1.39876 0.98035 0.86976 0.80860 0.83606 0.77764 1.19934 1.21626 1.18833 1.86497 1.75563 1.42675 1.20563 1.23947 0.75574 0.86562 0.86698 1.90622 1.48259 1.16921 1.84479 1.20739 1.05652 0.87930 0.82009 1.47060 1.13449 1.41230 1.33214 1.22581 0.90247 0.94892 0.98513 1.20852 0.81143 0.82425 0.84048 1.90813 1.58027 1.31739 1.53923 1.46228 1.15426 1.37150 1.33718 1.21819 0.95539 0.99139 0.88656 1.15756 0.84469 0.79566 0.79410 1.91000 1.18263 1.58565 1.72972 0.91640 0.92516 0.94405 0.91988 0.85011 0.85101 0.85427 0.85413 0.88814 0.90334 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.03 37.16 0.34 -3.54 16 2 C 0.19 4.72 2.15 -27.88 -0.06 4.66 16 3 H 0.05 1.17 6.21 -51.93 -0.32 0.85 16 4 C -0.53 -14.66 9.48 -34.44 -0.33 -14.98 16 5 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 6 C 0.08 2.28 5.45 -17.82 -0.10 2.19 16 7 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 8 Si 0.88 21.41 24.37 -169.99 -4.14 17.26 16 9 H -0.27 -6.41 6.87 56.52 0.39 -6.02 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 12 O -0.34 -7.17 9.86 -39.23 -0.39 -7.55 16 13 C 0.43 7.76 8.00 36.00 0.29 8.05 16 14 O -0.51 -10.79 15.65 -18.75 -0.29 -11.08 16 15 C 0.16 1.86 6.74 -5.19 -0.03 1.83 16 16 N -0.61 -7.17 2.51 -181.39 -0.45 -7.63 16 17 C 0.06 0.56 7.66 -4.32 -0.03 0.52 16 18 C 0.53 5.68 8.32 -10.55 -0.09 5.60 16 19 O -0.47 -6.05 17.51 5.60 0.10 -5.96 16 20 N -0.58 -6.58 3.00 -128.16 -0.39 -6.97 16 21 C 0.09 0.77 10.76 59.85 0.64 1.41 16 22 C 0.71 9.64 8.31 -88.02 -0.73 8.91 16 23 O -0.54 -9.04 17.34 5.33 0.09 -8.95 16 24 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.06 1.31 3.27 -51.93 -0.17 1.14 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.13 1.39 8.03 -51.93 -0.42 0.97 16 30 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.68 7.64 -51.93 -0.40 0.28 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -35.68 299.11 -4.16 -39.84 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -3.87 Total: -2.75 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -0.10 Total: 14.65 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.07 Total: -39.98 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.49 Total: -33.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.68 -4.16 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860544197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.079 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds