Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 13 13 C 1.34218 * 117.00377 * 89.99417 * 12 2 1 14 14 O 1.20826 * 119.99938 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00192 * 179.97438 * 13 12 2 16 16 N 1.46506 * 109.47491 * 180.02562 * 15 13 12 17 17 C 1.47307 * 126.68978 * 89.99838 * 16 15 13 18 18 C 1.51586 * 103.59039 * 179.97438 * 17 16 15 19 19 O 1.21235 * 127.15813 * 180.02562 * 18 17 16 20 20 N 1.34765 * 105.68651 * 0.02562 * 18 17 16 21 21 C 1.46500 * 124.17853 * 180.02562 * 20 18 17 22 22 C 1.33793 * 111.64241 * 359.76566 * 20 18 17 23 23 O 1.21544 * 123.76896 * 180.24845 * 22 20 18 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47472 * 300.00315 * 15 13 12 29 29 H 1.09005 * 109.47098 * 60.00468 * 15 13 12 30 30 H 1.09001 * 110.60039 * 298.49302 * 17 16 15 31 31 H 1.08998 * 110.59997 * 61.44520 * 17 16 15 32 32 H 1.08997 * 109.47393 * 359.97438 * 21 20 18 33 33 H 1.09007 * 109.46593 * 119.97756 * 21 20 18 34 34 H 1.08999 * 109.47118 * 239.97164 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 8 2.0141 -0.6843 -1.1857 13 6 2.2171 0.0642 -2.2811 14 8 1.9981 1.2520 -2.2503 15 6 2.7193 -0.5767 -3.5492 16 7 2.8582 0.4443 -4.5907 17 6 4.0551 1.2545 -4.8748 18 6 3.6269 2.1266 -6.0384 19 8 4.2938 2.9600 -6.6132 20 7 2.3505 1.7829 -6.3010 21 6 1.5380 2.3836 -7.3617 22 6 1.9190 0.8212 -5.4769 23 8 0.8023 0.3435 -5.5223 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.9032 -0.5282 4.4375 28 1 3.6885 -1.0397 -3.3633 29 1 2.0105 -1.3370 -3.8775 30 1 4.3170 1.8675 -4.0123 31 1 4.8911 0.6164 -5.1611 32 1 2.1256 3.1359 -7.8876 33 1 1.2267 1.6096 -8.0633 34 1 0.6568 2.8521 -6.9232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860544197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = -133.694579 kcal Electronic energy + Delta-G solvation = -20880.601220 eV Core-core repulsion = 17393.696529 eV Total energy + Delta-G solvation = -3486.904690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.42482 -41.36718 -39.77987 -37.93971 -37.25777 -36.23615 -35.29955 -32.82351 -31.43643 -28.21794 -27.89101 -27.33733 -24.31496 -23.34180 -21.89057 -21.15007 -19.36623 -18.82114 -18.48132 -18.19028 -17.81156 -17.51800 -17.09842 -16.53761 -16.40302 -15.88829 -15.35303 -15.17516 -15.04560 -14.80426 -14.40288 -14.31080 -13.91817 -13.75383 -13.53097 -13.45195 -13.15646 -12.88094 -12.25175 -12.13650 -11.85632 -11.69357 -11.56420 -11.42529 -11.24140 -10.96511 -10.84134 -10.23089 -8.44653 -6.52770 0.49019 0.84594 1.21380 1.23770 1.30279 1.38759 1.64446 1.84727 2.18296 2.19055 2.88366 2.97584 3.63136 3.70245 4.14277 4.19803 4.24526 4.33063 4.34730 4.38423 4.39522 4.46083 4.49416 4.68200 4.70505 4.76802 5.12954 5.17523 5.33401 5.63823 5.92830 6.14021 6.23475 6.52140 6.79485 6.89228 7.12019 8.70949 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.004321 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.567489 B = 6478.407559 C = 6532.260301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.195 3.805 3 H 0.031 0.969 4 C -0.536 4.536 5 H 0.055 0.945 6 C 0.034 3.966 7 N -0.928 5.928 8 Si 0.936 3.064 9 H -0.255 1.255 10 H -0.283 1.283 11 H -0.261 1.261 12 O -0.347 6.347 13 C 0.426 3.574 14 O -0.547 6.547 15 C 0.170 3.830 16 N -0.610 5.610 17 C 0.067 3.933 18 C 0.529 3.471 19 O -0.496 6.496 20 N -0.581 5.581 21 C 0.083 3.917 22 C 0.700 3.300 23 O -0.575 6.575 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.275 0.725 28 H 0.183 0.817 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.176 0.824 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 3.094 -20.390 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.141 3.859 3 H 0.049 0.951 4 C -0.574 4.574 5 H 0.073 0.927 6 C -0.166 4.166 7 N -0.566 5.566 8 Si 0.762 3.238 9 H -0.180 1.180 10 H -0.210 1.210 11 H -0.186 1.186 12 O -0.262 6.262 13 C 0.269 3.731 14 O -0.437 6.437 15 C 0.047 3.953 16 N -0.347 5.347 17 C -0.057 4.057 18 C 0.319 3.681 19 O -0.368 6.368 20 N -0.327 5.327 21 C -0.057 4.057 22 C 0.402 3.598 23 O -0.451 6.451 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.200 0.800 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.193 0.807 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.638 3.570 -20.443 20.919 hybrid contribution -0.726 0.858 0.741 1.346 sum 1.912 4.429 -19.702 20.284 Atomic orbital electron populations 1.22425 0.96848 1.02635 1.00326 1.20589 0.91626 0.93107 0.80585 0.95147 1.20941 1.33218 1.14084 0.89108 0.92722 1.25472 0.96774 0.99520 0.94826 1.69941 1.46143 1.41737 0.98755 0.86053 0.79962 0.79988 0.77847 1.18045 1.20987 1.18568 1.86487 1.76017 1.42946 1.20761 1.25289 0.74281 0.86327 0.87204 1.90608 1.49697 1.18521 1.84915 1.21052 1.08325 0.87340 0.78538 1.47207 1.13960 1.41273 1.32279 1.22861 0.90205 0.95045 0.97638 1.21129 0.80662 0.82108 0.84231 1.90810 1.58369 1.32722 1.54897 1.46363 1.15961 1.36570 1.33778 1.22014 0.95499 0.99812 0.88397 1.15994 0.84223 0.79640 0.79896 1.90968 1.19933 1.59946 1.74211 0.90953 0.92799 0.93124 0.91546 0.79980 0.83584 0.85122 0.80726 0.87522 0.89124 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.28 9.03 71.98 0.65 -6.63 16 2 C 0.20 9.49 2.15 29.85 0.06 9.56 16 3 H 0.03 1.57 6.21 -2.39 -0.01 1.56 16 4 C -0.54 -30.19 9.48 25.60 0.24 -29.95 16 5 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 6 C 0.03 1.93 5.45 84.65 0.46 2.39 16 7 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 8 Si 0.94 43.61 24.37 68.60 1.67 45.28 16 9 H -0.26 -11.12 6.87 99.48 0.68 -10.43 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.26 -11.99 6.53 99.48 0.65 -11.34 16 12 O -0.35 -14.40 9.86 -51.30 -0.51 -14.90 16 13 C 0.43 14.60 8.00 71.24 0.57 15.17 16 14 O -0.55 -22.36 15.65 21.96 0.34 -22.01 16 15 C 0.17 3.42 6.74 85.63 0.58 4.00 16 16 N -0.61 -12.59 2.51 -846.22 -2.12 -14.71 16 17 C 0.07 0.95 7.66 85.76 0.66 1.61 16 18 C 0.53 10.29 8.32 87.94 0.73 11.02 16 19 O -0.50 -11.78 17.51 -2.89 -0.05 -11.83 16 20 N -0.58 -12.30 3.00 -796.64 -2.39 -14.70 16 21 C 0.08 1.33 10.76 127.77 1.37 2.71 16 22 C 0.70 17.97 8.31 179.44 1.49 19.46 16 23 O -0.57 -18.89 17.34 -3.85 -0.07 -18.96 16 24 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.05 2.38 3.27 -2.39 -0.01 2.37 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.18 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.15 2.63 8.03 -2.38 -0.02 2.61 16 30 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.18 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.41 7.64 -2.39 -0.02 1.39 16 33 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.66 299.11 5.05 -73.61 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.05 Total: 3.95 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 6.82 Total: 29.33 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -4.22 Total: -84.46 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -0.28 Total: -67.71 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.28 kcal Total: -78.66 5.05 -73.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860544197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.083 kcal (2) G-P(sol) polarization free energy of solvation -78.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds