Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.46940 * 239.99896 * 2 1 3 5 5 H 1.07999 * 119.99877 * 240.00078 * 4 2 1 6 6 C 1.37877 * 119.99647 * 60.00210 * 4 2 1 7 7 N 1.31516 * 120.00549 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47250 * 59.99594 * 8 6 4 10 10 H 1.48504 * 109.46839 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47133 * 299.99337 * 8 6 4 12 12 N 1.46498 * 109.47070 * 120.00118 * 2 1 3 13 13 N 1.40109 * 119.99760 * 269.71824 * 12 2 1 14 14 C 1.29750 * 119.99847 * 180.27697 * 13 12 2 15 15 C 1.47440 * 119.99933 * 180.02562 * 14 13 12 16 16 C 1.39677 * 120.14791 * 180.02562 * 15 14 13 17 17 C 1.37892 * 119.95615 * 179.97438 * 16 15 14 18 18 C 1.38643 * 120.25380 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.84270 * 180.02562 * 18 17 16 20 20 C 1.38600 * 120.30374 * 0.02562 * 18 17 16 21 21 F 1.35095 * 119.97914 * 179.97438 * 20 18 17 22 22 C 1.38616 * 120.03770 * 359.71910 * 20 18 17 23 23 O 1.35902 * 120.12580 * 180.27759 * 22 20 18 24 24 H 1.09008 * 109.46576 * 300.00118 * 1 2 3 25 25 H 1.08994 * 109.47252 * 59.99913 * 1 2 3 26 26 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 27 27 H 0.96993 * 119.99987 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00384 * 90.00306 * 12 2 1 29 29 H 1.08001 * 119.99838 * 0.02562 * 14 13 12 30 30 H 1.08007 * 120.02508 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.87530 * 179.97438 * 17 16 15 32 32 H 0.96705 * 113.99816 * 270.25217 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8258 -0.4206 -5.2204 11 1 3.8062 -1.1209 -4.0083 12 7 2.0183 -0.6906 1.1961 13 7 2.2574 0.0310 2.3731 14 6 2.6950 -0.5798 3.4309 15 6 2.9461 0.1794 4.6696 16 6 3.4177 -0.4748 5.8100 17 6 3.6517 0.2392 6.9662 18 6 3.4212 1.6058 7.0020 19 9 3.6537 2.2973 8.1390 20 6 2.9533 2.2658 5.8766 21 9 2.7304 3.5976 5.9189 22 6 2.7189 1.5611 4.7062 23 8 2.2654 2.2073 3.6000 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.7081 1.1608 -3.4844 28 1 2.1800 -1.6468 1.1722 29 1 2.8753 -1.6443 3.4040 30 1 3.5998 -1.5392 5.7860 31 1 4.0160 -0.2681 7.8473 32 1 1.3014 2.2506 3.5372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872357828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -80.805956 kcal Electronic energy + Delta-G solvation = -19691.135315 eV Core-core repulsion = 16095.436532 eV Total energy + Delta-G solvation = -3595.698783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.50383 -49.58407 -40.59758 -37.95640 -37.56201 -35.82333 -33.45980 -31.50869 -30.84684 -28.60711 -27.27286 -24.77878 -23.92539 -22.35112 -21.73542 -19.74877 -19.06111 -18.53323 -18.28018 -17.67400 -17.28665 -16.94881 -16.78405 -16.05137 -15.84917 -15.56812 -15.23587 -15.03724 -14.58154 -14.34828 -14.28932 -13.65185 -13.44430 -13.05774 -12.86415 -12.70135 -12.62403 -12.33000 -12.15296 -12.06049 -11.91246 -11.12491 -10.74894 -10.57330 -9.99683 -9.80462 -8.42335 -8.16212 -6.33828 -0.38128 -0.06935 1.43728 1.45345 1.52867 1.55017 2.15418 2.46634 2.52222 2.61879 3.12482 3.24112 3.36346 3.59145 3.84638 4.06152 4.40717 4.58665 4.73616 4.84447 4.94953 5.01185 5.03721 5.13003 5.15461 5.37027 5.55423 5.66509 5.80654 5.90119 6.18532 6.41335 6.68679 6.85268 7.37767 7.79374 8.87782 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.039247 B = 0.003642 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.258838 B = 7685.254679 C = 8064.122067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.307 3.693 3 H 0.000 1.000 4 C -0.550 4.550 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.635 5.635 13 N -0.212 5.212 14 C 0.008 3.992 15 C -0.036 4.036 16 C -0.051 4.051 17 C -0.115 4.115 18 C 0.068 3.932 19 F -0.135 7.135 20 C 0.012 3.988 21 F -0.141 7.141 22 C 0.103 3.897 23 O -0.481 6.481 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.266 0.734 28 H 0.375 0.625 29 H 0.140 0.860 30 H 0.190 0.810 31 H 0.189 0.811 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -4.815 18.793 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.203 3.797 3 H 0.018 0.982 4 C -0.589 4.589 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.371 5.371 13 N -0.023 5.023 14 C -0.200 4.200 15 C -0.039 4.039 16 C -0.071 4.071 17 C -0.133 4.133 18 C 0.047 3.953 19 F -0.113 7.113 20 C -0.008 4.008 21 F -0.120 7.120 22 C 0.054 3.946 23 O -0.293 6.293 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.212 0.788 29 H 0.157 0.843 30 H 0.207 0.793 31 H 0.206 0.794 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.762 -3.564 17.963 18.695 hybrid contribution -0.188 -0.535 -0.682 0.887 sum 3.574 -4.098 17.281 18.116 Atomic orbital electron populations 1.21994 0.98520 0.99109 0.99758 1.18103 0.90380 0.91559 0.79629 0.98202 1.21526 1.32556 1.13550 0.91238 0.91959 1.25691 0.94898 0.95618 1.01914 1.70008 1.36819 1.23721 1.24684 0.85460 0.78536 0.78756 0.77951 1.19100 1.20830 1.19924 1.48651 1.73582 1.07711 1.07198 1.74238 1.06158 1.27801 0.94136 1.23860 1.06845 0.98333 0.90993 1.18947 1.00983 0.90146 0.93793 1.21428 0.94704 1.02410 0.88592 1.21356 1.00961 0.89500 1.01500 1.17859 1.04599 0.91751 0.81133 1.91507 1.92341 1.79772 1.47725 1.18292 1.09193 0.78451 0.94888 1.91460 1.92946 1.30602 1.96974 1.18585 1.00657 0.90472 0.84884 1.84882 1.28099 1.76765 1.39531 0.95951 0.91536 0.95026 0.92464 0.78806 0.84315 0.79323 0.79378 0.74013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.29 71.98 0.67 -5.85 16 2 C 0.31 15.63 3.23 44.25 0.14 15.78 16 3 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 4 C -0.55 -29.34 8.74 25.60 0.22 -29.12 16 5 H 0.06 3.20 7.79 -2.91 -0.02 3.17 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -51.46 11.32 21.45 0.24 -51.22 16 8 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.63 -26.79 6.10 -172.52 -1.05 -27.84 16 13 N -0.21 -8.03 9.34 -52.20 -0.49 -8.51 16 14 C 0.01 0.23 10.75 87.43 0.94 1.17 16 15 C -0.04 -0.85 5.88 -20.06 -0.12 -0.96 16 16 C -0.05 -0.73 9.78 22.54 0.22 -0.51 16 17 C -0.11 -1.58 10.00 22.28 0.22 -1.36 16 18 C 0.07 1.47 7.30 22.45 0.16 1.64 16 19 F -0.13 -3.10 17.17 44.97 0.77 -2.33 16 20 C 0.01 0.34 7.31 22.45 0.16 0.50 16 21 F -0.14 -4.41 17.01 44.97 0.77 -3.65 16 22 C 0.10 2.96 6.72 22.80 0.15 3.12 16 23 O -0.48 -16.25 11.24 -92.44 -1.04 -17.29 16 24 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.37 14.26 8.58 -213.31 -1.83 12.43 16 29 H 0.14 3.01 8.02 -2.91 -0.02 2.99 16 30 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.40 11.32 9.06 -74.05 -0.67 10.65 16 Total: -1.00 -65.97 295.71 3.14 -62.83 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -1.32 Total: 18.05 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 3.23 Total: -14.12 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -1.30 Total: -87.58 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.04 Total: -17.29 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 1.54 Total: -5.97 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -65.97 3.14 -62.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.979 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds