Wall clock time and date at job start Mon Mar 30 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46891 * 2 1 4 4 C 1.46495 * 120.00160 * 269.99532 * 3 2 1 5 5 C 1.50703 * 109.46973 * 270.00206 * 4 3 2 6 6 H 1.07992 * 120.00089 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99676 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47161 * 60.00173 * 9 7 5 11 11 H 1.48496 * 109.47073 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47294 * 300.00367 * 9 7 5 13 13 C 1.34782 * 120.00041 * 90.00081 * 3 2 1 14 14 O 1.21545 * 120.00210 * 179.97438 * 13 3 2 15 15 C 1.47856 * 119.99684 * 359.97438 * 13 3 2 16 16 C 1.40123 * 120.95742 * 270.00065 * 15 13 3 17 17 F 1.35099 * 120.52377 * 0.27432 * 16 15 13 18 18 C 1.38435 * 118.95461 * 180.02562 * 16 15 13 19 19 N 1.31764 * 120.93115 * 0.02562 * 18 16 15 20 20 C 1.31773 * 122.14150 * 359.97438 * 19 18 16 21 21 C 1.38420 * 120.92768 * 0.02562 * 20 19 18 22 22 F 1.35107 * 120.51663 * 179.97438 * 21 20 19 23 23 H 1.09007 * 109.46821 * 60.00417 * 1 2 3 24 24 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47360 * 300.00353 * 1 2 3 26 26 H 1.08994 * 109.47360 * 239.99647 * 2 1 3 27 27 H 1.09001 * 109.46240 * 119.99962 * 2 1 3 28 28 H 1.09001 * 109.47127 * 30.00111 * 4 3 2 29 29 H 1.09001 * 109.47124 * 150.00498 * 4 3 2 30 30 H 0.97004 * 119.99780 * 179.97438 * 8 7 5 31 31 H 1.07998 * 119.53297 * 179.97438 * 18 16 15 32 32 H 1.07995 * 119.53026 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7036 6 1 4.3426 1.2302 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 3.3493 3.1257 -3.6179 9 14 5.9133 2.0955 -3.4173 10 1 6.1404 0.6388 -3.5946 11 1 6.1609 2.7957 -4.7032 12 1 6.8412 2.6188 -2.3827 13 6 2.2429 2.0166 1.1672 14 8 2.6485 3.1624 1.1673 15 6 1.9960 1.3197 2.4477 16 6 0.7428 1.3809 3.0716 17 9 -0.2701 2.0764 2.5100 18 6 0.5575 0.7131 4.2700 19 7 1.5385 0.0288 4.8227 20 6 2.7322 -0.0556 4.2710 21 6 3.0086 0.5800 3.0727 22 9 4.2356 0.4884 2.5147 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 1.5818 1.6877 -2.0284 29 1 2.0956 3.1410 -1.1383 30 1 3.6754 3.5162 -4.4439 31 1 -0.4044 0.7543 4.7592 32 1 3.5057 -0.6286 4.7606 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874147266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:48 Heat of formation + Delta-G solvation = -106.594355 kcal Electronic energy + Delta-G solvation = -21049.711444 eV Core-core repulsion = 17452.894392 eV Total energy + Delta-G solvation = -3596.817052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.35279 -50.31640 -41.56657 -40.35767 -37.25303 -35.06319 -33.72568 -31.94382 -31.79353 -29.38852 -26.59157 -24.92288 -24.70464 -24.15783 -21.01994 -19.41518 -19.33927 -18.81526 -18.54453 -17.98468 -17.15678 -17.12928 -16.85871 -16.66658 -16.31031 -15.89175 -15.37759 -14.85399 -14.79910 -14.68320 -14.38924 -14.34875 -13.78954 -13.42002 -13.30151 -13.20064 -12.75728 -12.63252 -12.26122 -12.11882 -11.83087 -11.61202 -11.11480 -10.82917 -10.69230 -10.15412 -9.72518 -8.29074 -6.44228 -0.65647 -0.50054 1.23656 1.34651 1.38530 1.46342 1.90520 2.17038 2.34916 2.39188 2.76735 2.98995 3.05139 3.19867 3.49260 3.71173 3.90137 4.20963 4.26311 4.26652 4.43277 4.61365 4.75359 4.79931 4.90471 5.07563 5.22338 5.25057 5.41279 5.67881 5.95292 6.37872 6.38032 6.62337 6.96010 7.26729 8.78726 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025097 B = 0.006282 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.393222 B = 4455.900373 C = 4961.217383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.582 5.582 4 C 0.262 3.738 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.545 3.455 14 O -0.577 6.577 15 C -0.157 4.157 16 C 0.098 3.902 17 F -0.120 7.120 18 C 0.095 3.905 19 N -0.420 5.420 20 C 0.094 3.906 21 C 0.090 3.910 22 F -0.125 7.125 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.000 1.000 30 H 0.270 0.730 31 H 0.223 0.777 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -11.499 15.596 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.311 5.311 4 C 0.141 3.859 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.204 1.204 13 C 0.330 3.670 14 O -0.458 6.458 15 C -0.170 4.170 16 C 0.075 3.925 17 F -0.098 7.098 18 C -0.063 4.063 19 N -0.127 5.127 20 C -0.064 4.064 21 C 0.068 3.932 22 F -0.103 7.103 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.318 -11.229 16.108 20.627 hybrid contribution 1.150 1.155 -1.966 2.554 sum -5.168 -10.073 14.142 18.116 Atomic orbital electron populations 1.22203 0.93791 1.04027 1.02053 1.21777 0.95918 0.80966 1.03688 1.48284 1.61810 1.15098 1.05942 1.18871 0.96003 0.91603 0.79399 1.21607 0.97560 1.32747 1.06902 0.92935 1.25847 1.02561 0.94209 0.96177 1.70035 1.37861 1.33732 1.14768 0.85460 0.78700 0.79194 0.77451 1.18286 1.19949 1.20437 1.18310 0.78454 0.85871 0.84320 1.90768 1.47777 1.19686 1.87544 1.20738 0.95907 1.02320 0.97994 1.18847 0.82895 0.95941 0.94806 1.91566 1.57001 1.76524 1.84717 1.23557 1.01300 0.92002 0.89448 1.67831 0.99469 1.14590 1.30812 1.23501 0.96321 0.97160 0.89392 1.18970 0.80092 0.99153 0.95014 1.91595 1.39518 1.94193 1.85024 0.93215 0.87981 0.92803 0.89541 0.90057 0.94857 0.98157 0.92158 0.76069 0.76382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 10.24 71.98 0.74 -3.64 16 2 C 0.10 3.27 5.95 86.38 0.51 3.79 16 3 N -0.58 -26.32 2.46 -829.57 -2.04 -28.35 16 4 C 0.26 14.52 5.16 85.63 0.44 14.96 16 5 C -0.55 -32.41 9.39 25.60 0.24 -32.17 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.68 5.46 84.66 0.46 1.15 16 8 N -0.92 -56.22 13.29 21.45 0.28 -55.94 16 9 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.54 24.94 6.59 86.79 0.57 25.51 16 14 O -0.58 -32.55 16.68 -3.86 -0.06 -32.62 16 15 C -0.16 -5.20 3.95 -19.82 -0.08 -5.28 16 16 C 0.10 2.53 6.50 22.77 0.15 2.68 16 17 F -0.12 -3.43 15.54 44.97 0.70 -2.74 16 18 C 0.10 1.63 11.16 84.75 0.95 2.58 16 19 N -0.42 -7.36 10.33 -195.63 -2.02 -9.38 16 20 C 0.09 1.72 11.16 84.75 0.95 2.67 16 21 C 0.09 2.50 6.93 22.77 0.16 2.66 16 22 F -0.12 -4.10 16.92 44.97 0.76 -3.34 16 23 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.10 1.96 8.14 -2.38 -0.02 1.95 16 25 H 0.05 1.43 5.71 -2.39 -0.01 1.41 16 26 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 27 H 0.08 2.32 6.56 -2.39 -0.02 2.30 16 28 H 0.03 1.84 8.07 -2.39 -0.02 1.83 16 29 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 30 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 31 H 0.22 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -77.05 292.91 5.89 -71.16 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: 1.16 Total: -1.07 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 5.09 Total: 14.91 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -3.77 Total: -93.67 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.06 Total: -32.62 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 1.46 Total: -6.07 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.05 5.89 -71.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874147266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.438 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds