Wall clock time and date at job start Mon Mar 30 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39895 * 109.46901 * 2 1 4 4 F 1.39900 * 109.47151 * 240.00142 * 2 1 3 5 5 C 1.53001 * 109.47016 * 120.00095 * 2 1 3 6 6 C 1.50703 * 109.46846 * 180.02562 * 5 2 1 7 7 O 1.21268 * 119.99714 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99816 * 180.02562 * 6 5 2 9 9 C 1.39270 * 119.99841 * 185.60223 * 8 6 5 10 10 C 1.39665 * 119.57386 * 18.86567 * 9 8 6 11 11 C 1.38660 * 119.49508 * 180.02562 * 10 9 8 12 12 C 1.38353 * 118.66489 * 359.75040 * 11 10 9 13 13 C 1.40574 * 119.13012 * 0.49501 * 12 11 10 14 14 C 1.41340 * 119.78299 * 179.77047 * 13 12 11 15 15 H 1.07999 * 120.00492 * 7.00179 * 14 13 12 16 16 C 1.40035 * 119.99734 * 187.00570 * 14 13 12 17 17 N 1.30743 * 119.99802 * 181.89355 * 16 14 13 18 18 Si 1.86793 * 119.99839 * 1.89199 * 16 14 13 19 19 H 1.48500 * 109.47098 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47493 * 300.00279 * 18 16 14 21 21 H 1.48505 * 109.47259 * 60.00355 * 18 16 14 22 22 N 1.31906 * 119.57317 * 198.88671 * 9 8 6 23 23 H 1.09001 * 109.47414 * 299.99930 * 1 2 3 24 24 H 1.08996 * 109.47173 * 60.00118 * 1 2 3 25 25 H 1.09007 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46834 * 60.00182 * 5 2 1 27 27 H 1.09001 * 109.47008 * 300.00223 * 5 2 1 28 28 H 0.97003 * 120.00034 * 5.60235 * 8 6 5 29 29 H 1.08000 * 120.25511 * 0.02562 * 10 9 8 30 30 H 1.08000 * 120.66563 * 180.02562 * 11 10 9 31 31 H 1.07999 * 120.42870 * 180.24169 * 12 11 10 32 32 H 0.96997 * 119.99805 * 354.83071 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 3.5470 -0.7207 1.2495 7 8 4.1533 -0.1956 0.3400 8 7 4.2209 -1.3047 2.2601 9 6 5.6086 -1.2036 2.3218 10 6 6.2596 -0.2016 1.5987 11 6 7.6412 -0.1029 1.6609 12 6 8.3363 -1.0041 2.4477 13 6 7.6237 -1.9933 3.1475 14 6 8.3202 -2.9240 3.9514 15 1 9.3808 -2.8068 4.1177 16 6 7.6350 -3.9983 4.5322 17 7 8.2717 -4.8383 5.3058 18 14 5.8114 -4.2313 4.2017 19 1 5.3261 -5.4321 4.9281 20 1 5.0665 -3.0351 4.6704 21 1 5.5915 -4.4115 2.7441 22 7 6.2910 -2.0558 3.0620 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6767 -1.7489 1.2492 27 1 1.6766 -0.2075 2.1392 28 1 3.7394 -1.7953 2.9445 29 1 5.6912 0.4910 0.9958 30 1 8.1640 0.6649 1.1098 31 1 9.4125 -0.9507 2.5199 32 1 9.2322 -4.7619 5.4177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472755.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:02 Heat of formation + Delta-G solvation = -135.251003 kcal Electronic energy + Delta-G solvation = -20513.985614 eV Core-core repulsion = 16915.925917 eV Total energy + Delta-G solvation = -3598.059697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.84580 -47.86505 -41.69973 -39.90727 -36.32797 -35.42285 -34.24470 -33.03314 -31.56996 -29.43279 -27.27140 -24.49908 -23.66000 -22.64178 -21.50030 -20.35284 -19.14672 -18.58050 -18.28247 -17.35054 -16.96008 -16.93779 -16.64689 -16.20118 -15.52453 -15.26973 -14.97729 -14.71818 -14.51067 -14.25588 -14.22057 -13.78703 -13.72272 -13.44565 -13.13132 -13.03016 -12.95538 -12.66835 -12.27117 -11.95158 -11.80136 -11.63938 -11.15013 -10.83006 -10.45027 -9.78354 -9.29994 -9.25684 -6.85262 0.45258 0.69472 1.49111 1.54048 1.67527 1.78107 2.06358 2.44177 2.65532 2.78502 3.14345 3.35493 3.49873 3.54101 3.91868 4.05466 4.35571 4.37340 4.42223 4.60703 4.65483 4.70808 4.75527 4.88375 5.10894 5.31774 5.34544 5.39195 5.68329 5.76922 5.89952 6.23629 6.37301 6.61434 6.97673 7.44767 7.92952 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.005455 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.908157 B = 5131.311823 C = 5874.383768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.288 3.712 3 F -0.215 7.215 4 F -0.217 7.217 5 C -0.177 4.177 6 C 0.508 3.492 7 O -0.538 6.538 8 N -0.650 5.650 9 C 0.377 3.623 10 C -0.311 4.311 11 C -0.028 4.028 12 C -0.292 4.292 13 C 0.258 3.742 14 C -0.508 4.508 15 H 0.068 0.932 16 C 0.013 3.987 17 N -0.828 5.828 18 Si 1.189 2.811 19 H -0.327 1.327 20 H -0.267 1.267 21 H -0.302 1.302 22 N -0.610 5.610 23 H 0.115 0.885 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.423 0.577 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 7.120 -5.716 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.251 3.749 3 F -0.196 7.196 4 F -0.198 7.198 5 C -0.217 4.217 6 C 0.296 3.704 7 O -0.414 6.414 8 N -0.297 5.297 9 C 0.146 3.854 10 C -0.335 4.335 11 C -0.052 4.052 12 C -0.314 4.314 13 C 0.133 3.867 14 C -0.541 4.541 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.451 5.451 18 Si 1.021 2.979 19 H -0.260 1.260 20 H -0.194 1.194 21 H -0.231 1.231 22 N -0.336 5.336 23 H 0.134 0.866 24 H 0.101 0.899 25 H 0.132 0.868 26 H 0.183 0.817 27 H 0.186 0.814 28 H 0.262 0.738 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.133 0.867 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.810 5.978 -5.503 21.411 hybrid contribution 2.878 1.255 -0.518 3.182 sum -16.932 7.233 -6.022 19.372 Atomic orbital electron populations 1.22817 0.86947 1.07513 1.06818 1.21397 0.95868 0.74891 0.82712 1.93004 1.91173 1.38616 1.96818 1.93008 1.91187 1.81144 1.54470 1.23075 0.88934 1.08381 1.01290 1.21351 0.91654 0.77060 0.80287 1.90689 1.70456 1.44420 1.35787 1.43333 1.04109 1.53868 1.28380 1.18446 0.84427 0.90429 0.92111 1.21854 0.95444 1.04749 1.11431 1.21333 0.93684 0.96148 0.94067 1.21771 0.99905 1.02514 1.07232 1.18446 0.86638 0.91653 0.89964 1.20743 0.97002 1.08835 1.27498 0.91370 1.28639 1.12349 0.90453 0.88867 1.70665 1.12321 1.34863 1.27263 0.81420 0.68518 0.73001 0.74957 1.26015 1.19423 1.23060 1.65945 1.09047 1.29581 1.28999 0.86610 0.89855 0.86758 0.81700 0.81372 0.73844 0.83749 0.84035 0.86685 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.38 71.98 0.68 -0.88 16 2 C 0.29 5.57 1.85 30.60 0.06 5.63 16 3 F -0.21 -5.68 16.14 44.97 0.73 -4.96 16 4 F -0.22 -5.91 16.15 44.97 0.73 -5.19 16 5 C -0.18 -2.78 5.30 29.85 0.16 -2.63 16 6 C 0.51 15.27 7.44 87.66 0.65 15.92 16 7 O -0.54 -21.03 11.63 -2.99 -0.03 -21.06 16 8 N -0.65 -21.82 5.41 -308.38 -1.67 -23.49 16 9 C 0.38 16.76 7.51 133.25 1.00 17.76 16 10 C -0.31 -13.74 8.83 22.72 0.20 -13.54 16 11 C -0.03 -1.21 10.15 22.40 0.23 -0.98 16 12 C -0.29 -13.97 9.83 22.87 0.22 -13.74 16 13 C 0.26 13.68 6.39 40.20 0.26 13.94 16 14 C -0.51 -28.48 9.58 23.47 0.22 -28.26 16 15 H 0.07 3.88 8.05 -2.91 -0.02 3.86 16 16 C 0.01 0.73 5.52 85.29 0.47 1.20 16 17 N -0.83 -45.89 13.65 21.84 0.30 -45.59 16 18 Si 1.19 55.54 25.53 68.60 1.75 57.29 16 19 H -0.33 -14.82 7.11 99.48 0.71 -14.11 16 20 H -0.27 -11.53 6.70 99.48 0.67 -10.86 16 21 H -0.30 -14.36 7.10 99.48 0.71 -13.66 16 22 N -0.61 -30.34 4.58 -186.37 -0.85 -31.19 16 23 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.17 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.17 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.42 11.44 8.83 -92.71 -0.82 10.62 16 29 H 0.15 6.31 5.34 -3.12 -0.02 6.30 16 30 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 31 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 32 H 0.28 15.10 8.72 -92.71 -0.81 14.30 16 Total: -1.00 -74.32 283.55 5.36 -68.96 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.27 Total: 10.81 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 4.15 Total: -5.58 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -2.22 Total: -100.27 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.03 Total: -21.06 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 1.45 Total: -10.14 kcal Atomic # 14 Polarization: 55.54 SS G_CDS: 1.75 Total: 57.29 kcal Total: -74.32 5.36 -68.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472755.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.295 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds