Wall clock time and date at job start Mon Mar 30 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29756 * 120.00107 * 180.02562 * 13 12 2 15 15 C 1.47440 * 119.99984 * 179.97438 * 14 13 12 16 16 C 1.39692 * 120.15608 * 179.97438 * 15 14 13 17 17 C 1.38108 * 119.90872 * 180.02562 * 16 15 14 18 18 F 1.35104 * 119.88245 * 179.97438 * 17 16 15 19 19 C 1.38625 * 120.23573 * 0.02562 * 17 16 15 20 20 C 1.38394 * 120.32202 * 359.97438 * 19 17 16 21 21 F 1.35096 * 119.95990 * 179.97438 * 20 19 17 22 22 C 1.38686 * 120.08254 * 359.72526 * 20 19 17 23 23 O 1.35947 * 120.11641 * 180.29845 * 22 20 19 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 29 29 H 1.08002 * 119.99741 * 359.97438 * 14 13 12 30 30 H 1.07996 * 120.04693 * 359.97438 * 16 15 14 31 31 H 1.08002 * 119.83765 * 179.97438 * 19 17 16 32 32 H 0.96705 * 114.00156 * 270.25181 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5815 3.4342 15 6 2.9309 0.1770 4.6744 16 6 3.3965 -0.4782 5.8169 17 6 3.6249 0.2372 6.9760 18 9 4.0748 -0.3971 8.0808 19 6 3.3932 1.6035 7.0101 20 6 2.9320 2.2623 5.8838 21 9 2.7082 3.5940 5.9254 22 6 2.7041 1.5581 4.7110 23 8 2.2567 2.2056 3.6025 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.1801 -1.6466 1.1723 29 1 2.8647 -1.6460 3.4074 30 1 3.5769 -1.5427 5.7941 31 1 3.5736 2.1565 7.9201 32 1 1.2930 2.2489 3.5343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884441269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:03 Heat of formation + Delta-G solvation = -62.243631 kcal Electronic energy + Delta-G solvation = -19628.721057 eV Core-core repulsion = 16033.827196 eV Total energy + Delta-G solvation = -3594.893860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.08344 -48.98002 -39.48225 -36.49513 -36.35952 -34.15627 -31.99001 -30.49228 -29.23406 -27.28238 -25.31854 -23.81333 -22.76062 -20.84294 -20.29734 -18.35954 -17.88668 -17.69779 -16.61250 -16.19910 -15.98901 -15.58757 -15.37941 -15.10736 -14.86507 -14.44852 -14.17462 -13.43937 -13.32105 -12.89082 -12.57285 -12.46796 -12.06703 -11.88382 -11.44054 -11.09611 -10.92477 -10.72200 -10.62937 -10.32221 -10.28204 -9.57865 -9.22820 -9.03931 -8.59957 -8.54335 -7.01006 -6.20100 -4.28965 0.66370 0.85649 2.64090 3.21988 3.26968 3.27658 3.48293 3.53969 3.79794 4.11955 4.29929 4.43344 4.61635 4.79915 4.94952 5.12837 5.53475 5.59283 5.74385 5.82481 5.86254 6.17482 6.52677 6.61379 6.80398 6.88404 7.04237 7.48916 7.68513 7.74374 7.80927 8.03393 8.17925 8.76564 9.12606 9.37981 10.85780 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.003737 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.878188 B = 7491.615853 C = 8015.541714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.294 3.706 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.611 5.611 13 N -0.153 5.153 14 C -0.039 4.039 15 C 0.030 3.970 16 C -0.148 4.148 17 C 0.121 3.879 18 F -0.134 7.134 19 C -0.193 4.193 20 C 0.104 3.896 21 F -0.127 7.127 22 C 0.080 3.920 23 O -0.458 6.458 24 H 0.013 0.987 25 H 0.092 0.908 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.370 0.630 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -0.975 16.534 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.192 3.808 3 H 0.064 0.936 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.347 5.347 13 N 0.031 4.969 14 C -0.244 4.244 15 C 0.026 3.974 16 C -0.170 4.170 17 C 0.102 3.898 18 F -0.113 7.113 19 C -0.214 4.214 20 C 0.084 3.916 21 F -0.105 7.105 22 C 0.030 3.970 23 O -0.267 6.267 24 H 0.032 0.968 25 H 0.110 0.890 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.206 0.794 29 H 0.127 0.873 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.211 0.220 15.684 15.841 hybrid contribution 0.145 -1.605 -0.357 1.651 sum 2.356 -1.385 15.327 15.568 Atomic orbital electron populations 1.22201 0.98746 0.99258 1.00671 1.18638 0.90258 0.93831 0.78039 0.93561 1.21170 1.32600 1.13439 0.90167 0.92215 1.24850 0.94730 0.94960 0.98964 1.69871 1.35763 1.22397 1.24162 0.86469 0.79234 0.79564 0.81628 1.21017 1.20129 1.20156 1.49343 1.70362 1.08023 1.06945 1.74173 1.01948 1.27153 0.93622 1.23155 1.12721 0.96840 0.91660 1.18419 0.96067 0.90747 0.92129 1.21011 1.03880 1.01277 0.90810 1.16984 0.99767 0.89708 0.83358 1.91517 1.86637 1.81967 1.51166 1.20851 1.07193 0.93813 0.99557 1.17626 1.02318 0.78217 0.93430 1.91518 1.92218 1.29901 1.96906 1.18532 1.02659 0.89798 0.86006 1.84950 1.27199 1.75894 1.38687 0.96837 0.88998 0.95489 0.92403 0.79388 0.87275 0.83605 0.83535 0.75122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.29 37.16 0.35 -3.14 16 2 C 0.29 7.17 3.23 -69.09 -0.22 6.95 16 3 H 0.05 1.27 8.14 -51.92 -0.42 0.85 16 4 C -0.53 -13.93 8.74 -34.44 -0.30 -14.23 16 5 H 0.06 1.52 7.79 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.07 11.32 55.43 0.63 -23.44 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.61 -12.69 6.10 -5.88 -0.04 -12.72 16 13 N -0.15 -2.89 9.34 32.15 0.30 -2.59 16 14 C -0.04 -0.60 10.75 -14.68 -0.16 -0.76 16 15 C 0.03 0.41 5.88 -104.94 -0.62 -0.21 16 16 C -0.15 -1.66 9.76 -39.09 -0.38 -2.04 16 17 C 0.12 1.34 7.29 -39.49 -0.29 1.05 16 18 F -0.13 -1.47 17.26 2.25 0.04 -1.43 16 19 C -0.19 -2.13 9.99 -39.38 -0.39 -2.52 16 20 C 0.10 1.35 7.30 -39.36 -0.29 1.06 16 21 F -0.13 -1.73 17.11 2.25 0.04 -1.69 16 22 C 0.08 1.14 6.72 -38.75 -0.26 0.88 16 23 O -0.46 -7.28 11.24 -19.57 -0.22 -7.50 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.37 7.07 8.58 -182.60 -1.57 5.51 16 29 H 0.11 1.46 8.02 -52.49 -0.42 1.04 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.39 5.02 9.06 45.56 0.41 5.44 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -28.00 295.84 -6.02 -34.02 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.55 Total: 6.82 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.66 Total: -11.25 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.89 Total: -38.76 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.22 Total: -7.50 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.00 -6.02 -34.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.228 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds