Wall clock time and date at job start Mon Mar 30 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 N 1.40105 * 120.00129 * 270.00290 * 12 2 1 14 14 C 1.29756 * 120.00107 * 180.02562 * 13 12 2 15 15 C 1.47440 * 119.99984 * 179.97438 * 14 13 12 16 16 C 1.39692 * 120.15608 * 179.97438 * 15 14 13 17 17 C 1.38108 * 119.90872 * 180.02562 * 16 15 14 18 18 F 1.35104 * 119.88245 * 179.97438 * 17 16 15 19 19 C 1.38625 * 120.23573 * 0.02562 * 17 16 15 20 20 C 1.38394 * 120.32202 * 359.97438 * 19 17 16 21 21 F 1.35096 * 119.95990 * 179.97438 * 20 19 17 22 22 C 1.38686 * 120.08254 * 359.72526 * 20 19 17 23 23 O 1.35947 * 120.11641 * 180.29845 * 22 20 19 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00346 * 90.00694 * 12 2 1 29 29 H 1.08002 * 119.99741 * 359.97438 * 14 13 12 30 30 H 1.07996 * 120.04693 * 359.97438 * 16 15 14 31 31 H 1.08002 * 119.83765 * 179.97438 * 19 17 16 32 32 H 0.96705 * 114.00156 * 270.25181 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 7 2.2517 0.0301 2.3748 14 6 2.6847 -0.5815 3.4342 15 6 2.9309 0.1770 4.6744 16 6 3.3965 -0.4782 5.8169 17 6 3.6249 0.2372 6.9760 18 9 4.0748 -0.3971 8.0808 19 6 3.3932 1.6035 7.0101 20 6 2.9320 2.2623 5.8838 21 9 2.7082 3.5940 5.9254 22 6 2.7041 1.5581 4.7110 23 8 2.2567 2.2056 3.6025 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.1801 -1.6466 1.1723 29 1 2.8647 -1.6460 3.4074 30 1 3.5769 -1.5427 5.7941 31 1 3.5736 2.1565 7.9201 32 1 1.2930 2.2489 3.5343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884441269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:03 Heat of formation + Delta-G solvation = -80.420637 kcal Electronic energy + Delta-G solvation = -19629.509271 eV Core-core repulsion = 16033.827196 eV Total energy + Delta-G solvation = -3595.682074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.01809 -49.96313 -40.55811 -37.99014 -37.47042 -35.85370 -33.55566 -31.85900 -30.32336 -28.77085 -27.28394 -25.02226 -23.76987 -22.38616 -21.74921 -19.49565 -19.13064 -18.80211 -18.16610 -17.21155 -17.18383 -16.94612 -16.61902 -16.36646 -15.95534 -15.77706 -15.36295 -14.76708 -14.59674 -14.35846 -14.26617 -13.61059 -13.46947 -13.02636 -12.95764 -12.85428 -12.68316 -12.33690 -12.16058 -12.06223 -11.79507 -11.13250 -10.77719 -10.58288 -10.22229 -9.58305 -8.49548 -8.17006 -6.33971 -0.36999 -0.12568 1.43764 1.45262 1.50612 1.53308 2.08898 2.44798 2.46119 2.76753 3.12239 3.12465 3.39254 3.58101 3.88940 3.96334 4.41970 4.59796 4.63633 4.78786 4.83285 4.91770 5.00206 5.09009 5.14161 5.31527 5.54421 5.63418 5.79261 5.88888 6.17238 6.39390 6.74090 6.84007 7.37371 7.73742 8.87459 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.003737 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.878188 B = 7491.615853 C = 8015.541714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.307 3.693 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.267 1.267 12 N -0.632 5.632 13 N -0.201 5.201 14 C 0.002 3.998 15 C 0.003 3.997 16 C -0.122 4.122 17 C 0.123 3.877 18 F -0.128 7.128 19 C -0.170 4.170 20 C 0.090 3.910 21 F -0.134 7.134 22 C 0.069 3.931 23 O -0.482 6.482 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.266 0.734 28 H 0.375 0.625 29 H 0.136 0.864 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -2.412 18.527 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.203 3.797 3 H 0.020 0.980 4 C -0.589 4.589 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.793 3.207 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.192 1.192 12 N -0.369 5.369 13 N -0.013 5.013 14 C -0.206 4.206 15 C 0.000 4.000 16 C -0.143 4.143 17 C 0.103 3.897 18 F -0.107 7.107 19 C -0.190 4.190 20 C 0.070 3.930 21 F -0.113 7.113 22 C 0.020 3.980 23 O -0.293 6.293 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.212 0.788 29 H 0.153 0.847 30 H 0.193 0.807 31 H 0.190 0.810 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.209 -1.218 17.699 18.029 hybrid contribution -0.066 -1.127 -0.607 1.282 sum 3.143 -2.346 17.092 17.536 Atomic orbital electron populations 1.21998 0.98433 0.99125 0.99865 1.18136 0.90441 0.91655 0.79480 0.97952 1.21511 1.32600 1.13572 0.91230 0.92028 1.25677 0.94882 0.95615 1.01858 1.70006 1.36763 1.23655 1.24705 0.85465 0.78531 0.78740 0.78001 1.20764 1.19953 1.19181 1.48714 1.73316 1.07846 1.07019 1.74222 1.05512 1.27630 0.93952 1.23753 1.07611 0.98216 0.90991 1.18414 0.98677 0.90506 0.92393 1.21245 1.00979 1.02556 0.89530 1.16942 0.99656 0.89631 0.83468 1.91547 1.86502 1.81814 1.50808 1.21113 1.04376 0.94003 0.99557 1.17675 1.03519 0.78064 0.93701 1.91502 1.92435 1.30389 1.96938 1.18831 1.02679 0.90417 0.86031 1.84909 1.28125 1.76378 1.39857 0.95832 0.91443 0.95081 0.92432 0.78779 0.84692 0.80718 0.81020 0.74229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 9.29 71.98 0.67 -5.82 16 2 C 0.31 15.53 3.23 44.24 0.14 15.67 16 3 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 4 C -0.55 -29.30 8.74 25.60 0.22 -29.07 16 5 H 0.06 3.16 7.79 -2.91 -0.02 3.14 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.10 11.32 21.45 0.24 -50.86 16 8 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 N -0.63 -26.75 6.10 -172.53 -1.05 -27.81 16 13 N -0.20 -7.65 9.34 -52.20 -0.49 -8.14 16 14 C 0.00 0.07 10.75 87.43 0.94 1.01 16 15 C 0.00 0.08 5.88 -20.07 -0.12 -0.04 16 16 C -0.12 -2.25 9.76 22.59 0.22 -2.03 16 17 C 0.12 2.22 7.29 22.33 0.16 2.38 16 18 F -0.13 -2.25 17.26 44.97 0.78 -1.48 16 19 C -0.17 -3.17 9.99 22.40 0.22 -2.95 16 20 C 0.09 2.18 7.30 22.41 0.16 2.35 16 21 F -0.13 -3.52 17.11 44.97 0.77 -2.75 16 22 C 0.07 1.93 6.72 22.81 0.15 2.08 16 23 O -0.48 -15.65 11.24 -92.95 -1.04 -16.69 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.37 14.41 8.58 -213.32 -1.83 12.58 16 29 H 0.14 3.20 8.02 -2.91 -0.02 3.17 16 30 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.40 10.79 9.06 -74.05 -0.67 10.12 16 Total: -1.00 -61.52 295.84 3.14 -58.37 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -1.32 Total: 20.24 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.23 Total: -14.90 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -1.30 Total: -86.81 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -1.04 Total: -16.69 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 1.55 Total: -4.23 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -61.52 3.14 -58.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.049 kcal (2) G-P(sol) polarization free energy of solvation -61.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds