Wall clock time and date at job start Mon Mar 30 2020 00:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00055 * 2 1 3 5 5 H 1.08003 * 120.00582 * 120.00024 * 4 2 1 6 6 C 1.37885 * 119.99874 * 299.99594 * 4 2 1 7 7 N 1.31515 * 120.00088 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99857 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99880 * 8 6 4 10 10 H 1.48507 * 109.47101 * 209.99624 * 8 6 4 11 11 H 1.48499 * 109.47467 * 329.99423 * 8 6 4 12 12 N 1.46498 * 109.47214 * 239.99771 * 2 1 3 13 13 N 1.40109 * 119.99760 * 89.72111 * 12 2 1 14 14 C 1.29750 * 119.99847 * 180.27697 * 13 12 2 15 15 C 1.47440 * 119.99933 * 180.02562 * 14 13 12 16 16 C 1.39694 * 120.15721 * 179.72543 * 15 14 13 17 17 C 1.38108 * 119.90785 * 179.76382 * 16 15 14 18 18 F 1.35104 * 119.87903 * 180.25026 * 17 16 15 19 19 C 1.38615 * 120.23523 * 0.51465 * 17 16 15 20 20 C 1.38396 * 120.32177 * 359.73313 * 19 17 16 21 21 F 1.35105 * 119.95612 * 180.02562 * 20 19 17 22 22 C 1.38678 * 120.08717 * 0.02562 * 20 19 17 23 23 O 1.35946 * 120.12239 * 180.02562 * 22 20 19 24 24 H 1.09000 * 109.47195 * 59.99608 * 1 2 3 25 25 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47035 * 299.99925 * 1 2 3 27 27 H 0.96999 * 120.00078 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00384 * 270.00593 * 12 2 1 29 29 H 1.08002 * 120.00368 * 0.02562 * 14 13 12 30 30 H 1.07996 * 120.05095 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.84005 * 179.76246 * 19 17 16 32 32 H 0.96698 * 113.99770 * 269.98056 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8595 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8472 2.1766 1.4921 12 7 2.0183 -0.6906 -1.1961 13 7 2.2463 0.0289 -2.3765 14 6 2.6737 -0.5836 -3.4374 15 6 2.9141 0.1737 -4.6794 16 6 3.3797 -0.4816 -5.8219 17 6 3.5985 0.2320 -6.9840 18 9 4.0440 -0.4031 -8.0900 19 6 3.3679 1.5984 -7.0179 20 6 2.9115 2.2582 -5.8902 21 9 2.6887 3.5901 -5.9316 22 6 2.6825 1.5540 -4.7176 23 8 2.2337 2.2012 -3.6096 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9027 -0.5283 4.4376 28 1 2.1800 -1.6468 -1.1721 29 1 2.8533 -1.6483 -3.4108 30 1 3.5643 -1.5454 -5.7979 31 1 3.5448 2.1508 -7.9289 32 1 2.9378 2.5359 -3.0374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884441270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:05 Heat of formation + Delta-G solvation = -74.446144 kcal Electronic energy + Delta-G solvation = -19705.715351 eV Core-core repulsion = 16110.292350 eV Total energy + Delta-G solvation = -3595.423001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.01625 -49.96588 -40.56934 -38.11623 -37.46957 -35.88229 -33.84845 -32.17261 -30.40793 -29.10836 -27.16672 -25.07925 -23.77698 -22.38123 -21.79579 -19.52872 -19.24709 -18.82353 -18.32937 -17.24921 -17.22377 -17.17014 -16.62935 -16.37114 -15.96437 -15.76820 -15.36315 -15.05591 -14.82278 -14.46068 -14.20953 -14.07195 -13.74332 -13.34142 -13.12271 -12.96366 -12.69025 -12.37184 -12.07503 -11.81201 -11.51369 -11.28663 -10.84860 -10.81506 -10.26554 -9.58712 -8.56054 -8.36341 -6.43358 -0.38880 -0.12896 1.32224 1.38484 1.47206 1.48373 2.01563 2.28379 2.43923 2.75364 2.99972 3.11773 3.38493 3.55618 3.88142 3.95281 4.38855 4.44993 4.52256 4.63126 4.71606 4.78024 4.81275 4.91209 5.00851 5.05930 5.29423 5.50414 5.59406 5.64572 6.06427 6.44601 6.63717 6.73446 7.23271 7.64730 8.79381 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.004050 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.516691 B = 6911.222930 C = 7535.004888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.281 3.719 3 H 0.032 0.968 4 C -0.536 4.536 5 H 0.044 0.956 6 C 0.026 3.974 7 N -0.939 5.939 8 Si 0.947 3.053 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.249 1.249 12 N -0.630 5.630 13 N -0.199 5.199 14 C 0.011 3.989 15 C 0.002 3.998 16 C -0.121 4.121 17 C 0.121 3.879 18 F -0.129 7.129 19 C -0.169 4.169 20 C 0.091 3.909 21 F -0.134 7.134 22 C 0.074 3.926 23 O -0.480 6.480 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.270 0.730 28 H 0.377 0.623 29 H 0.136 0.864 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 3.754 -21.599 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.176 3.824 3 H 0.050 0.950 4 C -0.575 4.575 5 H 0.063 0.937 6 C -0.174 4.174 7 N -0.578 5.578 8 Si 0.774 3.226 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.173 1.173 12 N -0.366 5.366 13 N -0.010 5.010 14 C -0.197 4.197 15 C -0.001 4.001 16 C -0.143 4.143 17 C 0.102 3.898 18 F -0.108 7.108 19 C -0.190 4.190 20 C 0.071 3.929 21 F -0.112 7.112 22 C 0.025 3.975 23 O -0.292 6.292 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.215 0.785 29 H 0.153 0.847 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.489 4.615 -21.066 21.617 hybrid contribution 0.344 -0.509 0.591 0.852 sum 1.832 4.106 -20.475 20.963 Atomic orbital electron populations 1.22470 0.98594 1.01145 0.99465 1.18500 0.90119 0.93092 0.80697 0.94974 1.21302 1.32259 1.13556 0.90351 0.93744 1.25634 0.96902 0.99795 0.95034 1.69996 1.46890 1.42198 0.98746 0.85882 0.79234 0.79909 0.77595 1.18977 1.22213 1.17316 1.48355 1.73715 1.07992 1.06587 1.74189 1.05462 1.27612 0.93787 1.23767 1.06542 0.98426 0.90996 1.18375 0.98144 0.91072 0.92551 1.21257 1.00887 1.02553 0.89555 1.16957 0.99740 0.89694 0.83426 1.91548 1.86713 1.81778 1.50715 1.21125 1.04305 0.93972 0.99580 1.17657 1.02699 0.77839 0.94733 1.91508 1.92414 1.30349 1.96947 1.18765 1.00484 0.90706 0.87593 1.84873 1.36041 1.74565 1.33674 0.93106 0.92837 0.93989 0.92068 0.78530 0.84693 0.80817 0.81092 0.74056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.65 9.00 71.98 0.65 -6.00 16 2 C 0.28 12.87 2.82 44.24 0.12 13.00 16 3 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 4 C -0.54 -29.13 9.32 25.60 0.24 -28.89 16 5 H 0.04 2.65 8.03 -2.91 -0.02 2.62 16 6 C 0.03 1.43 5.45 84.66 0.46 1.89 16 7 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 8 Si 0.95 43.24 24.37 68.60 1.67 44.91 16 9 H -0.26 -11.46 6.87 99.48 0.68 -10.77 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.25 -10.74 6.53 99.48 0.65 -10.09 16 12 N -0.63 -24.95 6.10 -172.53 -1.05 -26.00 16 13 N -0.20 -6.90 9.34 -52.20 -0.49 -7.39 16 14 C 0.01 0.30 10.75 87.43 0.94 1.24 16 15 C 0.00 0.04 5.88 -20.07 -0.12 -0.08 16 16 C -0.12 -2.07 9.76 22.59 0.22 -1.85 16 17 C 0.12 2.05 7.29 22.33 0.16 2.21 16 18 F -0.13 -2.16 17.26 44.97 0.78 -1.39 16 19 C -0.17 -2.91 9.99 22.40 0.22 -2.69 16 20 C 0.09 2.00 7.30 22.41 0.16 2.17 16 21 F -0.13 -3.22 17.11 44.97 0.77 -2.46 16 22 C 0.07 1.85 6.72 22.80 0.15 2.00 16 23 O -0.48 -13.79 11.24 -92.94 -1.04 -14.83 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.38 14.14 8.58 -213.31 -1.83 12.31 16 29 H 0.14 2.98 8.02 -2.91 -0.02 2.96 16 30 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.40 9.41 9.06 -74.06 -0.67 8.74 16 Total: -1.00 -63.87 289.02 2.76 -61.11 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -1.39 Total: 19.02 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 3.22 Total: -16.99 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -1.24 Total: -89.38 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.04 Total: -14.83 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 1.55 Total: -3.84 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.67 Total: 44.91 kcal Total: -63.87 2.76 -61.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.335 kcal (2) G-P(sol) polarization free energy of solvation -63.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds