Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 N 1.40108 * 119.99907 * 89.99853 * 12 2 1 14 14 C 1.29744 * 120.00205 * 180.02562 * 13 12 2 15 15 C 1.47452 * 120.00187 * 180.02562 * 14 13 12 16 16 C 1.39700 * 120.10952 * 179.97438 * 15 14 13 17 17 C 1.37857 * 119.95885 * 179.97438 * 16 15 14 18 18 C 1.38838 * 120.16990 * 0.02562 * 17 16 15 19 19 O 1.35935 * 119.89326 * 179.97438 * 18 17 16 20 20 C 1.38960 * 120.21468 * 359.97438 * 18 17 16 21 21 F 1.35101 * 119.98028 * 179.97438 * 20 18 17 22 22 C 1.38247 * 120.04150 * 359.74797 * 20 18 17 23 23 F 1.35096 * 120.08772 * 180.24583 * 22 20 18 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 28 28 H 0.97002 * 120.00298 * 270.00357 * 12 2 1 29 29 H 1.08004 * 119.99738 * 359.97438 * 14 13 12 30 30 H 1.08000 * 120.02135 * 359.97438 * 16 15 14 31 31 H 1.08002 * 119.91711 * 180.02562 * 17 16 15 32 32 H 0.96691 * 114.00242 * 89.99586 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6838 -0.5819 -3.4343 15 6 2.9301 0.1765 -4.6746 16 6 3.3958 -0.4798 -5.8166 17 6 3.6244 0.2322 -6.9747 18 6 3.3936 1.6008 -7.0095 19 8 3.6215 2.2974 -8.1543 20 6 2.9304 2.2608 -5.8777 21 9 2.7079 3.5928 -5.9167 22 6 2.6927 1.5545 -4.7133 23 9 2.2376 2.1944 -3.6140 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9026 -0.5284 4.4375 28 1 2.1800 -1.6468 -1.1721 29 1 2.8639 -1.6465 -3.4075 30 1 3.5765 -1.5443 -5.7921 31 1 3.9841 -0.2760 -7.8573 32 1 2.8547 2.3520 -8.7407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884442031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -52.350208 kcal Electronic energy + Delta-G solvation = -19769.832325 eV Core-core repulsion = 16175.367476 eV Total energy + Delta-G solvation = -3594.464849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.34539 -48.35469 -39.62854 -37.36548 -36.40991 -34.15382 -31.92376 -30.53475 -30.24874 -27.54226 -25.19457 -23.76262 -22.98856 -20.94724 -20.40044 -19.00269 -17.84822 -17.51385 -16.95978 -16.56209 -16.09265 -15.52502 -15.46380 -15.03757 -14.75278 -14.47821 -14.11303 -13.76472 -13.45539 -13.26357 -12.75442 -12.58564 -12.25266 -12.11081 -11.82710 -11.56614 -11.07390 -11.01217 -10.79631 -10.26307 -9.81860 -9.61842 -9.28307 -9.04358 -8.87439 -8.71275 -7.13741 -6.24782 -4.27788 0.51368 0.81781 2.50996 3.19792 3.31735 3.33748 3.38043 3.43468 3.52052 3.99454 4.27003 4.38370 4.51550 4.66605 4.88650 5.09554 5.32602 5.45594 5.70388 5.84019 5.90448 5.97065 6.23099 6.32001 6.48086 6.51577 6.56230 6.86139 7.24061 7.24793 7.44343 7.83525 8.32838 8.74189 8.97962 9.34868 10.87542 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035872 B = 0.004043 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.360250 B = 6923.311238 C = 7453.588411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.268 3.732 3 H 0.045 0.955 4 C -0.536 4.536 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.605 5.605 13 N -0.175 5.175 14 C -0.024 4.024 15 C -0.017 4.017 16 C -0.080 4.080 17 C -0.125 4.125 18 C 0.087 3.913 19 O -0.485 6.485 20 C 0.039 3.961 21 F -0.125 7.125 22 C 0.095 3.905 23 F -0.102 7.102 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.268 0.732 28 H 0.378 0.622 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 1.289 -22.030 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.164 3.836 3 H 0.063 0.937 4 C -0.575 4.575 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.341 5.341 13 N 0.010 4.990 14 C -0.231 4.231 15 C -0.021 4.021 16 C -0.101 4.101 17 C -0.143 4.143 18 C 0.040 3.960 19 O -0.295 6.295 20 C 0.018 3.982 21 F -0.103 7.103 22 C 0.072 3.928 23 F -0.080 7.080 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.215 0.785 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.569 2.391 -20.940 21.084 hybrid contribution -0.920 -0.133 0.108 0.936 sum -0.352 2.258 -20.832 20.957 Atomic orbital electron populations 1.22577 0.99666 1.00957 0.99121 1.18957 0.89422 0.94376 0.80797 0.93749 1.21028 1.33376 1.14639 0.88410 0.90286 1.24812 0.95514 0.96775 0.95377 1.69864 1.44804 1.40086 0.98073 0.86845 0.80499 0.83427 0.77504 1.20237 1.22036 1.18753 1.48746 1.71034 1.08094 1.06271 1.74134 1.03046 1.27831 0.93956 1.23251 1.11071 0.97319 0.91437 1.18463 0.99748 0.89919 0.93958 1.20968 0.98132 1.00677 0.90354 1.21189 1.01641 0.91813 0.99683 1.18168 1.01635 0.90271 0.85947 1.84873 1.40240 1.74741 1.29645 1.18011 1.06509 0.78723 0.94913 1.91513 1.92571 1.29383 1.96867 1.17652 1.01643 0.90477 0.83029 1.91642 1.85426 1.80960 1.49961 0.94648 0.93377 0.92834 0.92183 0.78505 0.86545 0.83555 0.83712 0.75135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.00 37.16 0.33 -3.29 16 2 C 0.27 6.40 2.82 -69.08 -0.20 6.21 16 3 H 0.04 1.14 7.20 -51.93 -0.37 0.76 16 4 C -0.54 -14.59 9.32 -34.44 -0.32 -14.91 16 5 H 0.08 2.29 8.03 -52.49 -0.42 1.87 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 8 Si 0.89 21.49 24.37 -169.99 -4.14 17.35 16 9 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.61 -12.58 6.10 -5.88 -0.04 -12.62 16 13 N -0.18 -3.38 9.53 32.15 0.31 -3.08 16 14 C -0.02 -0.37 10.75 -14.68 -0.16 -0.53 16 15 C -0.02 -0.23 5.87 -104.98 -0.62 -0.85 16 16 C -0.08 -0.73 9.78 -39.18 -0.38 -1.12 16 17 C -0.12 -1.04 9.96 -39.50 -0.39 -1.43 16 18 C 0.09 0.91 6.71 -39.09 -0.26 0.65 16 19 O -0.48 -4.40 13.35 -19.53 -0.26 -4.66 16 20 C 0.04 0.53 7.30 -39.31 -0.29 0.24 16 21 F -0.12 -1.83 17.01 2.25 0.04 -1.79 16 22 C 0.10 1.43 7.28 -38.96 -0.28 1.15 16 23 F -0.10 -1.87 15.26 2.25 0.03 -1.84 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.38 7.19 8.58 -182.59 -1.57 5.63 16 29 H 0.12 1.45 8.02 -52.48 -0.42 1.03 16 30 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.39 1.57 9.06 45.56 0.41 1.99 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -32.13 289.21 -5.00 -37.13 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.41 Total: 2.54 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.66 Total: -11.76 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.04 Total: -41.33 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.26 Total: -4.66 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.13 -5.00 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884442031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.221 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds