Wall clock time and date at job start Mon Mar 30 2020 00:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 N 1.40101 * 120.00125 * 180.02562 * 14 12 2 16 16 C 1.39815 * 120.00321 * 180.02562 * 15 14 12 17 17 C 1.38895 * 120.04014 * 180.02562 * 16 15 14 18 18 C 1.38132 * 119.99062 * 179.97438 * 17 16 15 19 19 C 1.38414 * 120.08025 * 359.97094 * 18 17 16 20 20 F 1.35099 * 119.96376 * 180.02562 * 19 18 17 21 21 C 1.38664 * 120.07288 * 0.02592 * 19 18 17 22 22 F 1.35107 * 119.99442 * 180.02562 * 21 19 18 23 23 C 1.38326 * 120.00760 * 359.74712 * 21 19 18 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 29 29 H 0.97002 * 119.99828 * 359.97438 * 15 14 12 30 30 H 1.07999 * 120.00040 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.95879 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.03677 * 180.25152 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 7 2.1732 -0.9104 -3.5986 16 6 1.8359 -0.4324 -4.8684 17 6 2.2976 -1.0871 -6.0031 18 6 1.9632 -0.6142 -7.2572 19 6 1.1679 0.5114 -7.3849 20 9 0.8419 0.9715 -8.6125 21 6 0.7053 1.1672 -6.2541 22 9 -0.0714 2.2655 -6.3806 23 6 1.0342 0.6939 -4.9966 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7006 1.1552 3.4844 28 1 1.1493 0.5391 -2.5435 29 1 2.7309 -1.6991 -3.5097 30 1 2.9178 -1.9657 -5.9048 31 1 2.3222 -1.1239 -8.1391 32 1 0.6708 1.2020 -4.1156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885115044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:43 Heat of formation + Delta-G solvation = -67.502358 kcal Electronic energy + Delta-G solvation = -19706.642201 eV Core-core repulsion = 16111.520305 eV Total energy + Delta-G solvation = -3595.121896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.45341 -48.50867 -39.85749 -38.65200 -35.54013 -33.95262 -31.89321 -30.97852 -30.34245 -27.73592 -25.28782 -23.80376 -22.82219 -22.19886 -20.13916 -18.61031 -17.59968 -17.49515 -16.70861 -16.32252 -16.29330 -15.89336 -15.11498 -14.94915 -14.66195 -14.59567 -14.42268 -14.04142 -13.46872 -13.23330 -13.02410 -12.66189 -12.63445 -11.77356 -11.45378 -11.17400 -11.14916 -10.87413 -10.78736 -10.42612 -10.10557 -9.29824 -9.13971 -9.06949 -9.01360 -8.50213 -7.24201 -6.16450 -4.20929 0.83914 1.01016 2.13714 3.22046 3.25424 3.33467 3.41147 3.45857 3.72092 4.20416 4.35019 4.40898 4.51060 4.75002 5.03766 5.17361 5.30716 5.60958 5.69383 5.74779 5.84221 5.94566 6.43052 6.54029 6.63248 6.70880 6.94259 7.26955 7.51374 7.62906 7.84199 7.94030 8.16681 8.87596 8.92939 9.45474 10.91105 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042215 B = 0.003642 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.115481 B = 7685.270798 C = 8259.983715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.059 0.941 4 C -0.505 4.505 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.522 3.478 13 O -0.541 6.541 14 N -0.544 5.544 15 N -0.531 5.531 16 C 0.249 3.751 17 C -0.181 4.181 18 C -0.066 4.066 19 C -0.009 4.009 20 F -0.138 7.138 21 C 0.128 3.872 22 F -0.128 7.128 23 C -0.220 4.220 24 H 0.013 0.987 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.263 0.737 28 H 0.418 0.582 29 H 0.436 0.564 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -0.178 -16.815 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.544 4.544 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.312 3.688 13 O -0.414 6.414 14 N -0.294 5.294 15 N -0.251 5.251 16 C 0.140 3.860 17 C -0.205 4.205 18 C -0.086 4.086 19 C -0.031 4.031 20 F -0.117 7.117 21 C 0.107 3.893 22 F -0.106 7.106 23 C -0.245 4.245 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.260 0.740 29 H 0.279 0.721 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.131 -0.667 -16.371 16.385 hybrid contribution -0.038 0.027 0.555 0.557 sum 0.093 -0.641 -15.817 15.830 Atomic orbital electron populations 1.21821 0.96057 1.00252 1.01354 1.18922 0.94417 0.97030 0.87688 0.92307 1.21122 1.31488 1.13163 0.88609 0.90533 1.24943 0.94921 0.95028 0.99198 1.69861 1.36661 1.22958 1.23785 0.86344 0.78648 0.79761 0.82203 1.19522 1.20921 1.20930 1.22617 0.78906 0.84928 0.82355 1.90563 1.38123 1.26836 1.85881 1.45880 1.55197 1.30980 0.97357 1.43564 1.55326 1.30881 0.95300 1.17505 0.92436 0.91955 0.84122 1.20347 1.06955 1.03541 0.89635 1.20701 0.95719 0.93780 0.98380 1.17325 1.07284 0.99356 0.79166 1.91479 1.91751 1.88584 1.39909 1.17260 0.93761 0.85380 0.92849 1.91529 1.72015 1.50415 1.96679 1.20240 1.07223 1.00629 0.96426 0.96816 0.94614 0.88337 0.92760 0.74005 0.72077 0.84139 0.83646 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.86 37.16 0.33 -2.59 16 2 C 0.04 0.97 2.64 -92.92 -0.25 0.73 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.51 -13.56 8.38 -34.44 -0.29 -13.84 16 5 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -23.93 11.31 55.43 0.63 -23.31 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.52 10.90 7.27 -10.98 -0.08 10.82 16 13 O -0.54 -12.89 15.30 5.56 0.08 -12.80 16 14 N -0.54 -8.75 6.11 31.22 0.19 -8.56 16 15 N -0.53 -7.30 6.46 32.42 0.21 -7.09 16 16 C 0.25 2.92 6.72 -83.75 -0.56 2.36 16 17 C -0.18 -1.71 9.89 -39.38 -0.39 -2.10 16 18 C -0.07 -0.61 10.01 -39.56 -0.40 -1.01 16 19 C -0.01 -0.10 7.30 -39.36 -0.29 -0.39 16 20 F -0.14 -1.73 17.18 2.25 0.04 -1.69 16 21 C 0.13 1.59 7.30 -39.39 -0.29 1.30 16 22 F -0.13 -1.70 17.18 2.25 0.04 -1.66 16 23 C -0.22 -2.64 9.46 -39.33 -0.37 -3.01 16 24 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 2.34 6.06 -51.93 -0.31 2.02 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.42 5.82 6.02 -182.59 -1.10 4.72 16 29 H 0.44 5.90 8.01 -182.59 -1.46 4.44 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.14 1.58 6.20 -52.49 -0.33 1.25 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -29.35 288.85 -6.93 -36.28 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.78 Total: 4.77 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.67 Total: -6.22 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 1.03 Total: -38.95 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.35 -6.93 -36.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885115044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.219 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds