Wall clock time and date at job start Mon Mar 30 2020 00:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46949 * 2 1 4 4 C 1.36879 * 120.00312 * 82.74077 * 3 2 1 5 5 H 1.07996 * 120.00232 * 171.59269 * 4 3 2 6 6 C 1.39048 * 119.99689 * 351.58529 * 4 3 2 7 7 N 1.31367 * 120.00113 * 1.61231 * 6 4 3 8 8 Si 1.86795 * 120.00215 * 181.60864 * 6 4 3 9 9 H 1.48500 * 109.47164 * 90.00066 * 8 6 4 10 10 H 1.48500 * 109.47311 * 210.00698 * 8 6 4 11 11 H 1.48510 * 109.47112 * 330.00280 * 8 6 4 12 12 C 1.34780 * 120.00020 * 262.73439 * 3 2 1 13 13 O 1.21595 * 119.99772 * 184.75141 * 12 3 2 14 14 C 1.47718 * 120.00098 * 4.76214 * 12 3 2 15 15 C 1.40094 * 120.56140 * 298.69770 * 14 12 3 16 16 C 1.38337 * 118.28407 * 180.02562 * 15 14 12 17 17 C 1.38373 * 119.30919 * 0.26608 * 16 15 14 18 18 N 1.31939 * 121.09204 * 359.40939 * 17 16 15 19 19 C 1.31683 * 121.88441 * 0.63449 * 18 17 16 20 20 C 1.50700 * 119.72176 * 179.68046 * 19 18 17 21 21 F 1.39903 * 109.47191 * 119.97382 * 20 19 18 22 22 F 1.39900 * 109.47263 * 239.97881 * 20 19 18 23 23 H 1.08995 * 109.46759 * 60.00308 * 1 2 3 24 24 H 1.08998 * 109.46891 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47131 * 300.00225 * 1 2 3 26 26 H 1.08993 * 109.47493 * 240.00156 * 2 1 3 27 27 H 1.09000 * 109.47447 * 119.99532 * 2 1 3 28 28 H 0.96999 * 120.00230 * 179.97438 * 7 6 4 29 29 H 1.07997 * 120.85899 * 359.97438 * 15 14 12 30 30 H 1.07999 * 120.34357 * 180.02562 * 16 15 14 31 31 H 1.07993 * 119.45553 * 179.70801 * 17 16 15 32 32 H 1.09000 * 109.46831 * 359.97433 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1052 2.0765 1.1759 5 1 2.5896 3.0415 1.1981 6 6 1.5697 1.5403 2.3417 7 7 1.0086 0.3527 2.3212 8 14 1.6484 2.5086 3.9372 9 1 0.4341 3.3540 4.0635 10 1 1.7183 1.5680 5.0842 11 1 2.8555 3.3736 3.9322 12 6 2.3821 1.9674 -1.1579 13 8 2.8681 3.0819 -1.1486 14 6 2.1902 1.2560 -2.4381 15 6 2.8397 0.0387 -2.6809 16 6 2.6267 -0.5870 -3.8962 17 6 1.7915 0.0064 -4.8264 18 7 1.1879 1.1508 -4.5679 19 6 1.3588 1.7852 -3.4267 20 6 0.6506 3.0934 -3.1857 21 9 -0.1817 2.9741 -2.0676 22 9 1.5951 4.1002 -2.9588 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 0.6353 -0.0215 3.1345 29 1 3.4906 -0.3996 -1.9389 30 1 3.1103 -1.5268 -4.1182 31 1 1.6273 -0.4776 -5.7777 32 1 0.0509 3.3482 -4.0595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888555845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:01 Heat of formation + Delta-G solvation = -88.430289 kcal Electronic energy + Delta-G solvation = -21741.448918 eV Core-core repulsion = 18145.419519 eV Total energy + Delta-G solvation = -3596.029399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.95916 -47.97277 -41.61183 -39.89968 -37.15624 -34.26846 -33.50788 -32.82082 -31.28893 -28.17249 -26.98544 -25.31539 -23.81546 -23.47971 -21.35732 -19.05965 -18.76201 -18.57418 -18.30466 -18.14186 -17.04878 -16.77110 -16.11583 -15.96899 -15.39523 -15.08375 -14.90148 -14.73371 -14.57349 -14.34312 -14.32681 -14.03123 -13.52811 -13.28741 -13.19824 -12.85430 -12.66126 -12.31835 -12.18530 -12.03285 -11.90988 -10.98386 -10.90342 -10.73465 -10.42635 -10.17037 -9.71506 -8.21335 -5.91774 -0.28043 0.04400 1.35254 1.40817 1.52098 1.90719 2.23107 2.40790 2.54854 2.90750 3.10597 3.15051 3.40104 3.72709 3.86391 3.97665 4.02812 4.11881 4.34396 4.41279 4.48188 4.85383 4.92927 4.97204 5.04082 5.09647 5.36384 5.52060 5.58021 5.88616 6.02815 6.49903 6.67206 7.11690 7.40882 7.95252 8.61564 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.007761 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.566580 B = 3606.981263 C = 4096.311596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.115 3.885 3 N -0.433 5.433 4 C -0.333 4.333 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.871 5.871 8 Si 0.992 3.008 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.277 1.277 12 C 0.456 3.544 13 O -0.619 6.619 14 C -0.125 4.125 15 C -0.071 4.071 16 C -0.129 4.129 17 C 0.103 3.897 18 N -0.468 5.468 19 C 0.053 3.947 20 C 0.311 3.689 21 F -0.209 7.209 22 F -0.198 7.198 23 H 0.008 0.992 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.274 0.726 29 H 0.150 0.850 30 H 0.195 0.805 31 H 0.215 0.785 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -7.545 -11.022 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.007 4.007 3 N -0.149 5.149 4 C -0.461 4.461 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.511 5.511 8 Si 0.815 3.185 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.202 1.202 12 C 0.245 3.755 13 O -0.507 6.507 14 C -0.131 4.131 15 C -0.097 4.097 16 C -0.148 4.148 17 C -0.055 4.055 18 N -0.177 5.177 19 C -0.085 4.085 20 C 0.257 3.743 21 F -0.191 7.191 22 F -0.179 7.179 23 H 0.027 0.973 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.212 0.788 31 H 0.231 0.769 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.333 -6.769 -11.392 13.318 hybrid contribution 0.539 0.475 1.802 1.940 sum -0.794 -6.295 -9.591 11.499 Atomic orbital electron populations 1.21999 0.96239 1.00461 0.99675 1.22002 0.95269 0.81758 1.01638 1.43925 1.53265 1.12809 1.04872 1.19706 1.37017 1.03360 0.86057 0.90866 1.25957 0.95053 0.97454 1.01770 1.70198 1.36327 1.15465 1.29084 0.84957 0.78414 0.77988 0.77096 1.20289 1.18715 1.20222 1.18272 0.86351 0.86727 0.84157 1.90636 1.51054 1.21935 1.87081 1.20908 0.99242 0.97440 0.95519 1.22034 0.96886 0.91738 0.99034 1.22698 0.98047 1.02259 0.91789 1.23713 0.91209 0.89502 1.01078 1.67253 1.22577 1.10279 1.17574 1.21483 0.97998 0.97295 0.91690 1.20581 0.82578 0.83471 0.87684 1.93011 1.72208 1.96320 1.57528 1.93063 1.67284 1.61835 1.95731 0.97311 0.92085 0.91733 0.92246 0.87614 0.91548 0.83279 0.78756 0.76889 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 9.46 71.98 0.68 -4.89 16 2 C 0.12 5.24 5.28 86.38 0.46 5.69 16 3 N -0.43 -23.09 2.63 -638.95 -1.68 -24.77 16 4 C -0.33 -19.26 9.51 84.10 0.80 -18.46 16 5 H 0.07 4.60 7.18 -2.91 -0.02 4.58 16 6 C 0.00 -0.04 5.24 84.96 0.45 0.40 16 7 N -0.87 -43.22 7.19 21.68 0.16 -43.07 16 8 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 C 0.46 24.12 5.77 86.75 0.50 24.62 16 13 O -0.62 -37.74 14.37 -4.01 -0.06 -37.80 16 14 C -0.13 -5.20 4.88 -20.00 -0.10 -5.30 16 15 C -0.07 -2.18 7.72 22.74 0.18 -2.00 16 16 C -0.13 -2.60 10.10 22.33 0.23 -2.38 16 17 C 0.10 2.15 11.17 84.71 0.95 3.09 16 18 N -0.47 -13.97 10.24 -182.78 -1.87 -15.84 16 19 C 0.05 2.03 6.31 42.91 0.27 2.30 16 20 C 0.31 12.26 5.12 71.24 0.36 12.62 16 21 F -0.21 -9.56 16.54 44.97 0.74 -8.82 16 22 F -0.20 -9.20 14.89 44.97 0.67 -8.53 16 23 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 3.24 5.87 -2.39 -0.01 3.22 16 26 H 0.06 2.30 4.37 -2.39 -0.01 2.29 16 27 H 0.11 5.09 5.88 -2.39 -0.01 5.07 16 28 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 29 H 0.15 4.32 7.52 -2.91 -0.02 4.30 16 30 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.16 4.75 8.11 -2.39 -0.02 4.73 16 Total: -1.00 -74.07 276.94 5.92 -68.15 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.16 Total: 10.40 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 4.77 Total: 15.69 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.40 Total: -83.67 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.06 Total: -37.80 kcal Atomic # 9 Polarization: -18.76 SS G_CDS: 1.41 Total: -17.35 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -74.07 5.92 -68.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.282 kcal (2) G-P(sol) polarization free energy of solvation -74.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds