Wall clock time and date at job start Mon Mar 30 2020 01:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 13 13 C 1.34234 * 116.99937 * 90.00606 * 12 2 1 14 14 O 1.20820 * 119.99748 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99724 * 179.97438 * 13 12 2 16 16 C 1.52461 * 108.79532 * 301.64395 * 15 13 12 17 17 C 1.54790 * 108.74242 * 174.61890 * 16 15 13 18 18 H 1.08997 * 114.44461 * 196.97492 * 17 16 15 19 19 C 1.54967 * 106.17978 * 324.11973 * 17 16 15 20 20 C 1.52456 * 111.72371 * 80.58341 * 19 17 16 21 21 C 1.54969 * 111.71714 * 359.97438 * 20 19 17 22 22 H 1.09002 * 114.37024 * 152.81784 * 21 20 19 23 23 C 1.52468 * 108.79136 * 178.34902 * 15 13 12 24 24 S 1.84400 * 102.42904 * 28.49746 * 21 20 19 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 1.08998 * 108.76252 * 60.00130 * 15 13 12 30 30 H 1.09008 * 109.49939 * 295.63332 * 16 15 13 31 31 H 1.08998 * 109.50162 * 55.74184 * 16 15 13 32 32 H 1.09001 * 109.04167 * 319.98892 * 19 17 16 33 33 H 1.09003 * 108.94608 * 201.11478 * 19 17 16 34 34 H 1.09001 * 109.03877 * 239.40618 * 20 19 17 35 35 H 1.08997 * 108.94496 * 120.52491 * 20 19 17 36 36 H 1.09003 * 109.49876 * 304.25569 * 23 15 13 37 37 H 1.09001 * 109.49642 * 64.36420 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9976 1.2517 -2.2505 15 6 2.7194 -0.5771 -3.5490 16 6 4.0547 -1.2545 -3.2615 17 6 4.5030 -2.0267 -4.5259 18 1 5.2783 -2.7719 -4.3480 19 6 3.2104 -2.5898 -5.1690 20 6 2.4832 -1.5328 -5.9925 21 6 3.2284 -0.1743 -5.9685 22 1 3.0585 0.4475 -6.8475 23 6 2.8185 0.4903 -4.6332 24 16 4.9829 -0.6882 -5.7274 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1619 3.4844 29 1 2.0027 -1.3344 -3.8666 30 1 4.7937 -0.5009 -2.9890 31 1 3.9349 -1.9611 -2.4403 32 1 2.5467 -2.9451 -4.3808 33 1 3.4727 -3.4266 -5.8164 34 1 1.4803 -1.3951 -5.5884 35 1 2.4065 -1.8784 -7.0234 36 1 1.8516 0.9793 -4.7519 37 1 3.5680 1.2290 -4.3490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892689903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:30 Heat of formation + Delta-G solvation = -93.122239 kcal Electronic energy + Delta-G solvation = -19326.710588 eV Core-core repulsion = 16387.858461 eV Total energy + Delta-G solvation = -2938.852127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33652 -38.47298 -35.72126 -33.30224 -32.05262 -31.85870 -29.55729 -26.47151 -25.33096 -24.45930 -22.35813 -20.41953 -20.13120 -19.17269 -17.53757 -17.35104 -16.53586 -15.87827 -15.07012 -14.71959 -14.43988 -14.04950 -13.74547 -13.54756 -13.07696 -12.88685 -12.78667 -12.33019 -12.09036 -11.88939 -11.71198 -11.24625 -11.15958 -11.06927 -10.87530 -10.79671 -10.57867 -10.48891 -10.38556 -10.29728 -9.74876 -9.60026 -9.50283 -8.93219 -8.50665 -7.71631 -6.19897 -4.27115 1.79388 2.13118 2.95319 3.24906 3.28503 3.30489 3.57328 4.18569 4.30785 4.53021 4.61731 4.67535 4.90625 4.91058 5.01178 5.06635 5.13276 5.19880 5.51523 5.60796 5.68256 5.73838 5.83747 5.87337 5.91614 5.96652 6.20039 6.27174 6.61802 6.85508 6.89158 7.15404 7.57884 7.70674 7.92128 8.12329 8.61886 8.86500 9.38468 10.87489 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033247 B = 0.004695 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.975195 B = 5962.419719 C = 6301.276927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.355 6.355 13 C 0.454 3.546 14 O -0.520 6.520 15 C -0.092 4.092 16 C -0.109 4.109 17 C -0.017 4.017 18 H 0.128 0.872 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.026 4.026 22 H 0.126 0.874 23 C -0.101 4.101 24 S -0.325 6.325 25 H 0.015 0.985 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.267 0.733 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -6.107 -15.665 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.272 6.272 13 C 0.297 3.703 14 O -0.410 6.410 15 C -0.111 4.111 16 C -0.148 4.148 17 C -0.145 4.145 18 H 0.146 0.854 19 C -0.166 4.166 20 C -0.165 4.165 21 C -0.155 4.155 22 H 0.144 0.856 23 C -0.140 4.140 24 S -0.098 6.098 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.236 -5.228 -15.922 17.286 hybrid contribution -0.855 -0.588 1.308 1.670 sum 3.381 -5.816 -14.615 16.089 Atomic orbital electron populations 1.22159 0.97640 1.00041 1.01372 1.20619 0.91322 0.93917 0.77858 0.93654 1.20975 1.32580 1.13483 0.88904 0.91391 1.24885 0.94908 0.95079 0.99065 1.69884 1.36013 1.22500 1.24298 0.86337 0.79238 0.79525 0.81050 1.19973 1.21021 1.19939 1.86467 1.75689 1.43663 1.21335 1.23276 0.74931 0.85966 0.86146 1.90594 1.48797 1.16951 1.84643 1.21165 0.99385 0.99098 0.91439 1.22086 0.95782 1.00015 0.96938 1.24845 0.98859 0.95895 0.94887 0.85391 1.22314 0.95602 0.98905 0.99772 1.22333 0.99979 0.92845 1.01324 1.24554 0.90883 0.99021 1.00999 0.85558 1.21957 1.03823 0.97144 0.91098 1.88425 1.14631 1.46060 1.60651 0.96611 0.94467 0.88261 0.92330 0.87088 0.89669 0.88932 0.89678 0.90725 0.90120 0.90844 0.89929 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.33 37.16 0.35 -3.55 16 2 C 0.22 5.74 2.56 -27.88 -0.07 5.67 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.97 16 4 C -0.52 -14.50 8.90 -34.44 -0.31 -14.80 16 5 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.36 -8.22 9.57 -39.27 -0.38 -8.59 16 13 C 0.45 9.20 7.20 36.00 0.26 9.46 16 14 O -0.52 -12.09 15.10 -18.75 -0.28 -12.37 16 15 C -0.09 -1.32 2.07 -92.32 -0.19 -1.51 16 16 C -0.11 -1.44 4.67 -26.06 -0.12 -1.56 16 17 C -0.02 -0.18 4.90 -24.75 -0.12 -0.30 16 18 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.13 -1.14 5.23 -25.97 -0.14 -1.27 16 20 C -0.13 -1.11 5.22 -25.97 -0.14 -1.25 16 21 C -0.03 -0.27 4.83 -24.81 -0.12 -0.39 16 22 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.10 -1.32 3.97 -26.12 -0.10 -1.42 16 24 S -0.33 -3.97 22.07 -107.50 -2.37 -6.34 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.11 1.39 4.28 -51.93 -0.22 1.16 16 30 H 0.08 1.23 8.03 -51.92 -0.42 0.81 16 31 H 0.09 1.25 7.92 -51.93 -0.41 0.84 16 32 H 0.08 0.75 6.79 -51.93 -0.35 0.40 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.69 6.81 -51.93 -0.35 0.34 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.08 7.97 -51.93 -0.41 0.67 16 37 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -30.56 301.12 -9.04 -39.60 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.36 Total: 1.13 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.79 Total: -9.30 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.63 Total: -24.56 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.66 Total: -20.97 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -2.37 Total: -6.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.56 -9.04 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.526 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds