Wall clock time and date at job start Mon Mar 30 2020 01:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 13 13 C 1.34234 * 116.99937 * 90.00606 * 12 2 1 14 14 O 1.20820 * 119.99748 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99724 * 179.97438 * 13 12 2 16 16 C 1.52461 * 108.79532 * 301.64395 * 15 13 12 17 17 C 1.54790 * 108.74242 * 174.61890 * 16 15 13 18 18 H 1.08997 * 114.44461 * 196.97492 * 17 16 15 19 19 C 1.54967 * 106.17978 * 324.11973 * 17 16 15 20 20 C 1.52456 * 111.72371 * 80.58341 * 19 17 16 21 21 C 1.54969 * 111.71714 * 359.97438 * 20 19 17 22 22 H 1.09002 * 114.37024 * 152.81784 * 21 20 19 23 23 C 1.52468 * 108.79136 * 178.34902 * 15 13 12 24 24 S 1.84400 * 102.42904 * 28.49746 * 21 20 19 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 1.08998 * 108.76252 * 60.00130 * 15 13 12 30 30 H 1.09008 * 109.49939 * 295.63332 * 16 15 13 31 31 H 1.08998 * 109.50162 * 55.74184 * 16 15 13 32 32 H 1.09001 * 109.04167 * 319.98892 * 19 17 16 33 33 H 1.09003 * 108.94608 * 201.11478 * 19 17 16 34 34 H 1.09001 * 109.03877 * 239.40618 * 20 19 17 35 35 H 1.08997 * 108.94496 * 120.52491 * 20 19 17 36 36 H 1.09003 * 109.49876 * 304.25569 * 23 15 13 37 37 H 1.09001 * 109.49642 * 64.36420 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9976 1.2517 -2.2505 15 6 2.7194 -0.5771 -3.5490 16 6 4.0547 -1.2545 -3.2615 17 6 4.5030 -2.0267 -4.5259 18 1 5.2783 -2.7719 -4.3480 19 6 3.2104 -2.5898 -5.1690 20 6 2.4832 -1.5328 -5.9925 21 6 3.2284 -0.1743 -5.9685 22 1 3.0585 0.4475 -6.8475 23 6 2.8185 0.4903 -4.6332 24 16 4.9829 -0.6882 -5.7274 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1619 3.4844 29 1 2.0027 -1.3344 -3.8666 30 1 4.7937 -0.5009 -2.9890 31 1 3.9349 -1.9611 -2.4403 32 1 2.5467 -2.9451 -4.3808 33 1 3.4727 -3.4266 -5.8164 34 1 1.4803 -1.3951 -5.5884 35 1 2.4065 -1.8784 -7.0234 36 1 1.8516 0.9793 -4.7519 37 1 3.5680 1.2290 -4.3490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892689903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:30 Heat of formation + Delta-G solvation = -109.333224 kcal Electronic energy + Delta-G solvation = -19327.413549 eV Core-core repulsion = 16387.858461 eV Total energy + Delta-G solvation = -2939.555088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79524 -39.77552 -37.55807 -35.34331 -33.11346 -32.83477 -31.55648 -27.61835 -27.39433 -25.39620 -24.00973 -22.08280 -20.94581 -20.54210 -19.04998 -18.57334 -18.27336 -17.62672 -16.68343 -16.51891 -15.56577 -15.31363 -14.74794 -14.71285 -14.48694 -14.35208 -13.99550 -13.78448 -13.58543 -13.28137 -13.03270 -13.00147 -12.81845 -12.65506 -12.39182 -12.18019 -11.99599 -11.88649 -11.60619 -11.51843 -11.34205 -11.19490 -11.00196 -10.64027 -10.59233 -8.68447 -8.29000 -6.46146 0.91974 1.27147 1.30182 1.41989 1.45535 1.53637 1.96804 2.40573 3.01792 3.32800 3.47040 3.65518 3.78630 3.87501 4.00230 4.09781 4.14947 4.18615 4.41452 4.55261 4.60001 4.75923 4.78132 4.82303 4.85310 4.86279 5.00300 5.06639 5.09332 5.16886 5.21569 5.25563 5.48097 5.62324 5.91701 6.08448 6.59090 6.95267 7.25959 8.78478 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033247 B = 0.004695 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.975195 B = 5962.419719 C = 6301.276927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.262 1.262 12 O -0.358 6.358 13 C 0.447 3.553 14 O -0.555 6.555 15 C -0.078 4.078 16 C -0.109 4.109 17 C -0.001 4.001 18 H 0.148 0.852 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.010 4.010 22 H 0.146 0.854 23 C -0.100 4.100 24 S -0.371 6.371 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.271 0.729 29 H 0.140 0.860 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -8.342 -16.619 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.020 0.980 4 C -0.585 4.585 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.186 1.186 12 O -0.274 6.274 13 C 0.292 3.708 14 O -0.446 6.446 15 C -0.096 4.096 16 C -0.148 4.148 17 C -0.128 4.128 18 H 0.165 0.835 19 C -0.167 4.167 20 C -0.165 4.165 21 C -0.138 4.138 22 H 0.164 0.836 23 C -0.139 4.139 24 S -0.144 6.144 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.251 -7.471 -16.904 18.964 hybrid contribution -0.843 0.191 1.564 1.787 sum 3.408 -7.281 -15.340 17.319 Atomic orbital electron populations 1.21976 0.96714 1.00488 1.00752 1.20317 0.92041 0.91898 0.79377 0.97975 1.21266 1.33429 1.13933 0.89870 0.91248 1.25836 0.94696 0.95640 1.02189 1.70013 1.36637 1.23677 1.25262 0.85242 0.78746 0.78721 0.76765 1.19411 1.20358 1.18614 1.86462 1.76008 1.43596 1.21362 1.24551 0.73690 0.85754 0.86803 1.90576 1.50235 1.18659 1.85154 1.21334 1.00433 0.99681 0.88172 1.22068 0.94478 0.99664 0.98632 1.24920 1.00281 0.95090 0.92547 0.83455 1.22378 0.94534 0.99505 1.00270 1.22389 0.99762 0.91528 1.02871 1.24622 0.89341 1.00134 0.99704 0.83632 1.21934 1.03101 0.96491 0.92372 1.88644 1.16957 1.47541 1.61215 0.95824 0.93301 0.90223 0.92025 0.84238 0.91747 0.89209 0.89147 0.88526 0.89417 0.88645 0.90028 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.26 9.33 71.98 0.67 -6.59 16 2 C 0.22 11.91 2.56 29.85 0.08 11.99 16 3 H 0.00 0.15 7.16 -2.39 -0.02 0.14 16 4 C -0.55 -30.84 8.90 25.60 0.23 -30.62 16 5 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.98 42.53 29.54 68.60 2.03 44.55 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 O -0.36 -16.83 9.57 -51.46 -0.49 -17.32 16 13 C 0.45 18.46 7.20 71.23 0.51 18.97 16 14 O -0.55 -26.81 15.10 21.98 0.33 -26.48 16 15 C -0.08 -2.16 2.07 -11.90 -0.02 -2.19 16 16 C -0.11 -2.79 4.67 31.03 0.14 -2.64 16 17 C 0.00 -0.01 4.90 31.88 0.16 0.14 16 18 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 19 C -0.13 -1.81 5.23 31.09 0.16 -1.65 16 20 C -0.13 -1.77 5.22 31.09 0.16 -1.61 16 21 C -0.01 -0.19 4.83 31.84 0.15 -0.03 16 22 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 23 C -0.10 -2.54 3.97 30.99 0.12 -2.42 16 24 S -0.37 -8.50 22.07 -56.49 -1.25 -9.74 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 4.40 6.07 -2.39 -0.01 4.39 16 28 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.14 3.13 4.28 -2.39 -0.01 3.12 16 30 H 0.06 1.90 8.03 -2.38 -0.02 1.88 16 31 H 0.09 2.35 7.92 -2.39 -0.02 2.33 16 32 H 0.09 1.24 6.79 -2.39 -0.02 1.22 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.16 6.81 -2.39 -0.02 1.14 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 2.10 7.97 -2.39 -0.02 2.08 16 37 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -67.82 301.12 4.74 -63.08 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.06 Total: 13.79 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 2.82 Total: -15.31 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.24 Total: -52.57 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.16 Total: -43.80 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.25 Total: -9.74 kcal Total: -67.82 4.74 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.248 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds