Wall clock time and date at job start Mon Mar 30 2020 01:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46990 * 2 1 4 4 C 1.50697 * 109.47449 * 239.99861 * 2 1 3 5 5 H 1.08001 * 120.00237 * 240.00179 * 4 2 1 6 6 C 1.37877 * 119.99686 * 59.99729 * 4 2 1 7 7 N 1.31513 * 120.00457 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48488 * 109.47278 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46851 * 120.00539 * 8 6 4 11 11 H 1.48501 * 109.46934 * 240.00165 * 8 6 4 12 12 O 1.45198 * 109.46946 * 119.99695 * 2 1 3 13 13 C 1.34230 * 117.00173 * 270.00291 * 12 2 1 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 2 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 2 16 16 C 1.52457 * 108.79144 * 301.64506 * 15 13 12 17 17 C 1.54790 * 108.73718 * 174.61847 * 16 15 13 18 18 H 1.09002 * 114.45017 * 196.97463 * 17 16 15 19 19 C 1.54972 * 106.18303 * 324.11783 * 17 16 15 20 20 C 1.52450 * 111.71828 * 80.58468 * 19 17 16 21 21 C 1.54972 * 111.72154 * 359.97438 * 20 19 17 22 22 H 1.09005 * 114.36649 * 152.81361 * 21 20 19 23 23 C 1.52461 * 108.78808 * 178.35003 * 15 13 12 24 24 S 1.84396 * 102.42377 * 28.50129 * 21 20 19 25 25 H 1.08999 * 109.47111 * 60.00118 * 1 2 3 26 26 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47362 * 300.00397 * 1 2 3 28 28 H 0.96998 * 120.00219 * 179.97438 * 7 6 4 29 29 H 1.08998 * 108.75622 * 60.00435 * 15 13 12 30 30 H 1.08999 * 109.50221 * 295.63216 * 16 15 13 31 31 H 1.08998 * 109.50300 * 55.74765 * 16 15 13 32 32 H 1.08999 * 109.04041 * 319.99374 * 19 17 16 33 33 H 1.09002 * 108.94694 * 201.11164 * 19 17 16 34 34 H 1.09004 * 109.03943 * 239.40381 * 20 19 17 35 35 H 1.09003 * 108.94693 * 120.53218 * 20 19 17 36 36 H 1.08996 * 109.50649 * 304.25758 * 23 15 13 37 37 H 1.09005 * 109.50332 * 64.37108 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1663 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9930 1.2509 2.2519 15 6 2.7181 -0.5772 3.5496 16 6 1.7359 -1.6641 3.9716 17 6 2.3180 -2.4127 5.1950 18 1 1.8524 -3.3773 5.3972 19 6 3.8505 -2.4765 4.9732 20 6 4.5321 -1.1705 5.3653 21 6 3.5125 -0.1238 5.8816 22 1 3.9277 0.6014 6.5814 23 6 2.8957 0.5042 4.6096 24 16 2.1782 -1.1837 6.5862 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7095 1.1617 -3.4844 29 1 3.6864 -1.0367 3.3512 30 1 0.7760 -1.2109 4.2192 31 1 1.6042 -2.3729 3.1541 32 1 4.0493 -2.6793 3.9209 33 1 4.2617 -3.2869 5.5751 34 1 5.0490 -0.7641 4.4959 35 1 5.2616 -1.3735 6.1494 36 1 3.5587 1.2812 4.2293 37 1 1.9259 0.9390 4.8518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892689904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:32 Heat of formation + Delta-G solvation = -93.253130 kcal Electronic energy + Delta-G solvation = -19327.263680 eV Core-core repulsion = 16388.405877 eV Total energy + Delta-G solvation = -2938.857803 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34004 -38.47357 -35.72198 -33.30576 -32.05855 -31.86129 -29.56340 -26.46344 -25.33943 -24.46689 -22.34400 -20.48000 -20.11740 -19.12795 -17.58699 -17.35476 -16.52895 -15.86269 -15.05142 -14.72526 -14.48147 -14.04758 -13.75645 -13.58956 -13.08581 -12.82206 -12.71649 -12.43931 -12.07554 -11.96265 -11.64139 -11.25818 -11.16466 -11.08544 -10.88192 -10.79051 -10.58274 -10.48276 -10.36804 -10.30405 -9.77455 -9.57440 -9.51410 -8.91827 -8.51862 -7.72839 -6.20756 -4.27863 1.78509 2.12199 2.95489 3.21433 3.28033 3.32430 3.57163 4.18606 4.30062 4.52342 4.61508 4.67107 4.90398 4.90558 5.00579 5.06365 5.12861 5.19361 5.51604 5.60673 5.68461 5.74284 5.83142 5.87377 5.90851 5.95262 6.17655 6.26235 6.62799 6.87109 6.90032 7.15907 7.57955 7.70893 7.92190 8.12119 8.61714 8.86570 9.37897 10.86704 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.004566 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.798654 B = 6131.373988 C = 6349.306132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.045 0.955 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.355 6.355 13 C 0.454 3.546 14 O -0.520 6.520 15 C -0.093 4.093 16 C -0.109 4.109 17 C -0.017 4.017 18 H 0.128 0.872 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.026 4.026 22 H 0.127 0.873 23 C -0.101 4.101 24 S -0.326 6.326 25 H 0.099 0.901 26 H 0.036 0.964 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -5.732 15.038 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.272 6.272 13 C 0.297 3.703 14 O -0.410 6.410 15 C -0.111 4.111 16 C -0.148 4.148 17 C -0.145 4.145 18 H 0.146 0.854 19 C -0.166 4.166 20 C -0.165 4.165 21 C -0.154 4.154 22 H 0.145 0.855 23 C -0.140 4.140 24 S -0.098 6.098 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.559 -5.187 15.864 17.302 hybrid contribution 0.847 -0.267 -1.843 2.046 sum 5.405 -5.454 14.021 15.986 Atomic orbital electron populations 1.22152 0.97571 1.00073 1.01398 1.20629 0.91397 0.93881 0.77860 0.93683 1.21056 1.32438 1.13440 0.88898 0.91306 1.24893 0.94926 0.95089 0.99087 1.69909 1.36102 1.22564 1.24080 0.86232 0.78645 0.79487 0.81845 1.19493 1.20697 1.20748 1.86467 1.75701 1.43642 1.21343 1.23275 0.75006 0.85944 0.86083 1.90594 1.48473 1.17113 1.84809 1.21166 1.01783 0.96980 0.91216 1.22076 0.98623 0.96776 0.97282 1.24841 0.98000 0.98617 0.93028 0.85411 1.22316 0.92949 0.98144 1.03204 1.22337 0.98350 0.93842 1.01991 1.24559 0.94183 0.98349 0.98330 0.85546 1.21954 1.03022 0.96869 0.92165 1.88413 1.52405 1.30435 1.38565 0.88292 0.94451 0.96537 0.92440 0.86994 0.89772 0.89031 0.89622 0.90720 0.90044 0.90835 0.89866 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.33 37.16 0.35 -3.56 16 2 C 0.21 5.72 2.56 -27.88 -0.07 5.65 16 3 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 4 C -0.52 -14.45 8.90 -34.44 -0.31 -14.75 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 O -0.36 -8.22 9.57 -39.26 -0.38 -8.59 16 13 C 0.45 9.20 7.20 36.01 0.26 9.46 16 14 O -0.52 -12.08 15.10 -18.74 -0.28 -12.37 16 15 C -0.09 -1.32 2.07 -92.32 -0.19 -1.51 16 16 C -0.11 -1.39 4.67 -26.07 -0.12 -1.52 16 17 C -0.02 -0.17 4.90 -24.75 -0.12 -0.29 16 18 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.13 -1.14 5.23 -25.97 -0.14 -1.28 16 20 C -0.13 -1.13 5.22 -25.97 -0.14 -1.26 16 21 C -0.03 -0.27 4.83 -24.80 -0.12 -0.39 16 22 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.10 -1.32 3.96 -26.12 -0.10 -1.42 16 24 S -0.33 -3.92 22.07 -107.50 -2.37 -6.30 16 25 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.11 1.42 4.29 -51.93 -0.22 1.20 16 30 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 31 H 0.09 1.20 7.92 -51.93 -0.41 0.79 16 32 H 0.09 0.77 6.79 -51.93 -0.35 0.42 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.72 6.81 -51.93 -0.35 0.36 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.10 7.97 -51.93 -0.41 0.69 16 37 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -30.57 301.13 -9.04 -39.61 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.36 Total: 1.08 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -0.79 Total: -9.28 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.53 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.66 Total: -20.96 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.37 Total: -6.30 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.57 -9.04 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.642 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds