Wall clock time and date at job start Mon Mar 30 2020 01:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46990 * 2 1 4 4 C 1.50697 * 109.47449 * 239.99861 * 2 1 3 5 5 H 1.08001 * 120.00237 * 240.00179 * 4 2 1 6 6 C 1.37877 * 119.99686 * 59.99729 * 4 2 1 7 7 N 1.31513 * 120.00457 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48488 * 109.47278 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46851 * 120.00539 * 8 6 4 11 11 H 1.48501 * 109.46934 * 240.00165 * 8 6 4 12 12 O 1.45198 * 109.46946 * 119.99695 * 2 1 3 13 13 C 1.34230 * 117.00173 * 270.00291 * 12 2 1 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 2 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 2 16 16 C 1.52457 * 108.79144 * 301.64506 * 15 13 12 17 17 C 1.54790 * 108.73718 * 174.61847 * 16 15 13 18 18 H 1.09002 * 114.45017 * 196.97463 * 17 16 15 19 19 C 1.54972 * 106.18303 * 324.11783 * 17 16 15 20 20 C 1.52450 * 111.71828 * 80.58468 * 19 17 16 21 21 C 1.54972 * 111.72154 * 359.97438 * 20 19 17 22 22 H 1.09005 * 114.36649 * 152.81361 * 21 20 19 23 23 C 1.52461 * 108.78808 * 178.35003 * 15 13 12 24 24 S 1.84396 * 102.42377 * 28.50129 * 21 20 19 25 25 H 1.08999 * 109.47111 * 60.00118 * 1 2 3 26 26 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47362 * 300.00397 * 1 2 3 28 28 H 0.96998 * 120.00219 * 179.97438 * 7 6 4 29 29 H 1.08998 * 108.75622 * 60.00435 * 15 13 12 30 30 H 1.08999 * 109.50221 * 295.63216 * 16 15 13 31 31 H 1.08998 * 109.50300 * 55.74765 * 16 15 13 32 32 H 1.08999 * 109.04041 * 319.99374 * 19 17 16 33 33 H 1.09002 * 108.94694 * 201.11164 * 19 17 16 34 34 H 1.09004 * 109.03943 * 239.40381 * 20 19 17 35 35 H 1.09003 * 108.94693 * 120.53218 * 20 19 17 36 36 H 1.08996 * 109.50649 * 304.25758 * 23 15 13 37 37 H 1.09005 * 109.50332 * 64.37108 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1663 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0641 2.2811 14 8 1.9930 1.2509 2.2519 15 6 2.7181 -0.5772 3.5496 16 6 1.7359 -1.6641 3.9716 17 6 2.3180 -2.4127 5.1950 18 1 1.8524 -3.3773 5.3972 19 6 3.8505 -2.4765 4.9732 20 6 4.5321 -1.1705 5.3653 21 6 3.5125 -0.1238 5.8816 22 1 3.9277 0.6014 6.5814 23 6 2.8957 0.5042 4.6096 24 16 2.1782 -1.1837 6.5862 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7095 1.1617 -3.4844 29 1 3.6864 -1.0367 3.3512 30 1 0.7760 -1.2109 4.2192 31 1 1.6042 -2.3729 3.1541 32 1 4.0493 -2.6793 3.9209 33 1 4.2617 -3.2869 5.5751 34 1 5.0490 -0.7641 4.4959 35 1 5.2616 -1.3735 6.1494 36 1 3.5587 1.2812 4.2293 37 1 1.9259 0.9390 4.8518 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892689904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:32 Heat of formation + Delta-G solvation = -109.409509 kcal Electronic energy + Delta-G solvation = -19327.964273 eV Core-core repulsion = 16388.405877 eV Total energy + Delta-G solvation = -2939.558396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79700 -39.77493 -37.55990 -35.34533 -33.10942 -32.83488 -31.57196 -27.59497 -27.41834 -25.40399 -23.99542 -22.12273 -20.93441 -20.51001 -19.04983 -18.69950 -18.18121 -17.60289 -16.69169 -16.51720 -15.57571 -15.33808 -14.77573 -14.70438 -14.51818 -14.14060 -14.01565 -13.96813 -13.55567 -13.24119 -13.10129 -12.97846 -12.82399 -12.64832 -12.40788 -12.14417 -11.99852 -11.88967 -11.60025 -11.52866 -11.34277 -11.19432 -10.98631 -10.63961 -10.60781 -8.68149 -8.29335 -6.46431 0.92067 1.26875 1.30518 1.42254 1.43057 1.56780 1.96618 2.40716 3.01614 3.32834 3.46812 3.65520 3.78537 3.87325 4.00201 4.09453 4.15180 4.18814 4.41258 4.55085 4.59816 4.75382 4.78303 4.80223 4.85586 4.86776 4.99691 5.06492 5.09322 5.16018 5.21232 5.25343 5.48144 5.61351 5.91159 6.08220 6.59495 6.95293 7.25904 8.78688 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.004566 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.798654 B = 6131.373988 C = 6349.306132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.545 4.545 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.261 1.261 10 H -0.273 1.273 11 H -0.277 1.277 12 O -0.358 6.358 13 C 0.447 3.553 14 O -0.555 6.555 15 C -0.079 4.079 16 C -0.108 4.108 17 C -0.001 4.001 18 H 0.149 0.851 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.011 4.011 22 H 0.145 0.855 23 C -0.100 4.100 24 S -0.368 6.368 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.020 0.980 28 H 0.270 0.730 29 H 0.137 0.863 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -7.712 15.495 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.022 0.978 4 C -0.583 4.583 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.202 1.202 12 O -0.274 6.274 13 C 0.292 3.708 14 O -0.446 6.446 15 C -0.097 4.097 16 C -0.147 4.147 17 C -0.129 4.129 18 H 0.167 0.833 19 C -0.167 4.167 20 C -0.166 4.166 21 C -0.139 4.139 22 H 0.163 0.837 23 C -0.139 4.139 24 S -0.140 6.140 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.090 -7.173 16.351 18.865 hybrid contribution 0.342 0.424 -1.934 2.009 sum 6.432 -6.749 14.417 17.169 Atomic orbital electron populations 1.21977 0.96960 1.00398 1.00603 1.20322 0.91890 0.92008 0.79414 0.97778 1.21322 1.33284 1.13861 0.89787 0.91172 1.25854 0.94703 0.95644 1.02246 1.70031 1.36724 1.23772 1.25152 0.85122 0.78326 0.78459 0.77427 1.18447 1.19805 1.20218 1.86462 1.76009 1.43589 1.21364 1.24550 0.73794 0.85718 0.86718 1.90576 1.49940 1.18842 1.85269 1.21334 1.02879 0.97423 0.88072 1.22065 0.97629 0.96340 0.98684 1.24923 0.99234 0.98378 0.90319 0.83320 1.22376 0.91533 0.98929 1.03898 1.22390 0.98155 0.93193 1.02876 1.24615 0.93692 0.98730 0.96833 0.83684 1.21929 1.02159 0.96536 0.93248 1.88619 1.53866 1.31927 1.39606 0.90195 0.93395 0.96142 0.92036 0.84528 0.91430 0.89107 0.89270 0.88543 0.89627 0.88693 0.90264 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.36 9.33 71.98 0.67 -6.69 16 2 C 0.22 11.91 2.56 29.85 0.08 11.98 16 3 H 0.00 0.27 7.16 -2.39 -0.02 0.26 16 4 C -0.55 -30.56 8.90 25.60 0.23 -30.34 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.51 16 8 Si 0.98 42.29 29.54 68.60 2.03 44.31 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 12 O -0.36 -16.83 9.57 -51.41 -0.49 -17.32 16 13 C 0.45 18.47 7.20 71.24 0.51 18.98 16 14 O -0.55 -26.82 15.10 21.99 0.33 -26.49 16 15 C -0.08 -2.19 2.07 -11.90 -0.02 -2.21 16 16 C -0.11 -2.66 4.67 31.03 0.14 -2.52 16 17 C 0.00 -0.02 4.90 31.88 0.16 0.14 16 18 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 19 C -0.13 -1.85 5.23 31.09 0.16 -1.68 16 20 C -0.13 -1.84 5.22 31.09 0.16 -1.68 16 21 C -0.01 -0.20 4.83 31.84 0.15 -0.05 16 22 H 0.15 2.20 8.14 -2.38 -0.02 2.18 16 23 C -0.10 -2.54 3.96 30.99 0.12 -2.42 16 24 S -0.37 -8.25 22.07 -56.49 -1.25 -9.50 16 25 H 0.08 4.47 6.07 -2.39 -0.01 4.45 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.14 3.18 4.29 -2.39 -0.01 3.17 16 30 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 31 H 0.09 2.27 7.92 -2.39 -0.02 2.25 16 32 H 0.09 1.27 6.79 -2.39 -0.02 1.26 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.21 6.81 -2.39 -0.02 1.19 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 2.08 7.97 -2.39 -0.02 2.06 16 37 H 0.06 1.90 8.03 -2.38 -0.02 1.88 16 Total: -1.00 -67.47 301.13 4.74 -62.73 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.06 Total: 13.98 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 2.82 Total: -15.21 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.24 Total: -52.51 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.16 Total: -43.81 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.25 Total: -9.50 kcal Total: -67.47 4.74 -62.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.677 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds