Wall clock time and date at job start Mon Mar 30 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48508 * 109.46841 * 239.99908 * 3 2 1 5 5 H 1.48499 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47386 * 119.99572 * 3 2 1 7 7 C 1.38795 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00217 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00048 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00281 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00385 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47339 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.08997 * 110.43909 * 56.08656 * 16 15 14 18 18 C 1.54893 * 110.48543 * 293.54279 * 16 15 14 19 19 C 1.54885 * 102.74710 * 203.38218 * 18 16 15 20 20 C 1.54268 * 104.19938 * 37.94360 * 19 18 16 21 21 H 1.08998 * 117.40938 * 117.57738 * 20 19 18 22 22 C 1.52993 * 118.19977 * 272.21424 * 20 19 18 23 23 C 1.52997 * 60.37898 * 93.61168 * 22 20 19 24 24 H 1.09000 * 119.75048 * 111.12241 * 23 22 20 25 25 H 0.97002 * 120.00347 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46914 * 59.99873 * 10 9 7 27 27 H 1.09000 * 109.47109 * 300.00097 * 10 9 7 28 28 H 1.09002 * 109.47239 * 59.99675 * 14 13 11 29 29 H 1.08998 * 109.46869 * 300.00400 * 14 13 11 30 30 H 1.09002 * 109.47153 * 59.99705 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99896 * 15 14 13 32 32 H 1.08998 * 110.75747 * 321.70092 * 18 16 15 33 33 H 1.08995 * 110.75369 * 85.06893 * 18 16 15 34 34 H 1.08999 * 110.48463 * 156.62356 * 19 18 16 35 35 H 1.09000 * 110.48719 * 279.12744 * 19 18 16 36 36 H 1.09002 * 117.45883 * 201.21623 * 22 20 19 37 37 H 1.09002 * 117.45728 * 346.01024 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7957 -5.5015 -0.0010 13 8 2.8408 -6.3389 0.0003 14 6 2.2612 -7.6701 -0.0009 15 6 3.3801 -8.7136 -0.0009 16 6 2.7693 -10.1164 -0.0028 17 1 2.0957 -10.2370 -0.8512 18 6 2.0203 -10.3833 1.3264 19 6 2.0183 -11.9297 1.4130 20 6 3.4010 -12.3411 0.8664 21 1 4.0747 -12.8621 1.5466 22 6 3.5485 -12.5528 -0.6417 23 6 3.8785 -11.1881 -0.0337 24 1 4.9118 -10.8418 -0.0108 25 1 -0.4851 0.8400 -0.0004 26 1 3.1245 -3.7313 0.8905 27 1 3.1245 -3.7313 -0.8894 28 1 1.6459 -7.7978 -0.8916 29 1 1.6441 -7.7985 0.8883 30 1 3.9958 -8.5861 0.8896 31 1 3.9968 -8.5850 -0.8904 32 1 2.5606 -9.9499 2.1680 33 1 1.0019 -9.9977 1.2800 34 1 1.9053 -12.2537 2.4476 35 1 1.2224 -12.3454 0.7950 36 1 4.3824 -13.1656 -0.9840 37 1 2.6342 -12.6333 -1.2297 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893801097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:29 Heat of formation + Delta-G solvation = -81.521794 kcal Electronic energy + Delta-G solvation = -17537.562334 eV Core-core repulsion = 14599.213240 eV Total energy + Delta-G solvation = -2938.349094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18982 -39.71770 -36.28291 -33.72009 -32.47997 -31.00604 -29.71269 -27.05019 -25.53638 -23.58204 -22.12242 -20.94808 -20.54195 -19.75062 -17.90398 -17.11118 -16.46247 -16.06609 -15.76805 -15.15829 -14.84156 -14.45431 -14.10394 -13.55468 -13.34398 -13.20322 -12.89030 -12.66069 -12.41340 -11.89488 -11.74291 -11.37397 -11.35903 -11.09476 -11.05899 -10.99955 -10.84229 -10.80467 -10.40863 -10.29397 -9.97291 -9.93503 -9.89004 -9.10253 -8.35470 -6.59666 -6.26577 -3.99312 2.66705 2.69576 3.22260 3.24148 3.27713 3.31557 3.52555 4.10817 4.15865 4.37788 4.43529 4.80093 4.81864 4.90575 4.94233 5.09048 5.11533 5.17976 5.22836 5.26797 5.34306 5.40731 5.43096 5.46473 5.62207 5.70264 5.74744 5.79538 5.84138 5.91432 5.94788 5.97279 6.09656 6.16102 6.74692 7.55590 8.20794 8.30750 9.18664 10.80883 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.064707 B = 0.002692 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.618494 B =10398.127922 C =10623.107340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.075 0.925 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.363 6.363 14 C 0.066 3.934 15 C -0.109 4.109 16 C -0.060 4.060 17 H 0.079 0.921 18 C -0.124 4.124 19 C -0.097 4.097 20 C -0.169 4.169 21 H 0.108 0.892 22 C -0.155 4.155 23 C -0.157 4.157 24 H 0.112 0.888 25 H 0.270 0.730 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 -22.562 0.822 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.167 5.833 10 C -0.277 4.277 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.281 6.281 14 C -0.009 4.009 15 C -0.146 4.146 16 C -0.079 4.079 17 H 0.097 0.903 18 C -0.161 4.161 19 C -0.134 4.134 20 C -0.187 4.187 21 H 0.126 0.874 22 C -0.192 4.192 23 C -0.175 4.175 24 H 0.130 0.870 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.138 -22.739 0.835 23.568 hybrid contribution 1.867 1.152 0.001 2.194 sum 8.005 -21.586 0.836 23.038 Atomic orbital electron populations 1.70002 1.05986 1.27738 1.46547 1.25005 0.95070 0.99108 0.94346 0.86175 0.79200 0.80945 0.78906 1.19841 1.20780 1.19838 1.22805 0.94995 0.91191 1.59450 0.90639 1.85407 1.04446 0.96555 1.96886 1.23291 1.06911 0.91027 1.06433 1.23286 0.85196 0.87145 0.72382 1.90660 1.16974 1.85712 1.44150 1.86490 1.41345 1.15454 1.84780 1.23001 0.96205 0.79071 1.02591 1.21540 0.97563 0.91731 1.03778 1.21516 0.95592 0.92374 0.98403 0.90268 1.22843 1.00642 0.95427 0.97233 1.21950 0.95021 0.95490 1.00948 1.23251 0.98985 1.03580 0.92929 0.87391 1.23064 1.03066 0.98182 0.94887 1.23225 0.99482 0.89038 1.05782 0.87044 0.92018 0.87951 0.87952 0.91431 0.91254 0.90620 0.90624 0.90839 0.90965 0.91207 0.91452 0.88504 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 10 C -0.13 -2.66 6.27 36.00 0.23 -2.44 16 11 C 0.48 9.38 7.98 36.00 0.29 9.67 16 12 O -0.49 -10.93 15.61 -18.75 -0.29 -11.22 16 13 O -0.36 -5.89 10.22 -39.27 -0.40 -6.29 16 14 C 0.07 0.85 5.31 37.16 0.20 1.05 16 15 C -0.11 -1.06 5.07 -26.73 -0.14 -1.20 16 16 C -0.06 -0.51 2.69 -88.96 -0.24 -0.75 16 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.12 -1.02 5.51 -24.74 -0.14 -1.16 16 19 C -0.10 -0.71 6.62 -25.07 -0.17 -0.88 16 20 C -0.17 -1.24 6.94 -89.51 -0.62 -1.86 16 21 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.16 -1.08 10.07 -26.74 -0.27 -1.35 16 23 C -0.16 -1.22 6.36 -89.50 -0.57 -1.79 16 24 H 0.11 0.83 8.05 -51.93 -0.42 0.42 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 27 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.07 0.90 7.38 -51.93 -0.38 0.51 16 30 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 33 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -31.79 325.41 -9.35 -41.14 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.83 Total: -2.22 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.23 Total: -13.55 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.73 Total: -25.15 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.69 Total: -17.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.79 -9.35 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893801097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.381 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds