Wall clock time and date at job start Mon Mar 30 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48508 * 109.46841 * 239.99908 * 3 2 1 5 5 H 1.48499 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47386 * 119.99572 * 3 2 1 7 7 C 1.38795 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00217 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00048 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00281 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00385 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47339 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.08997 * 110.43909 * 56.08656 * 16 15 14 18 18 C 1.54893 * 110.48543 * 293.54279 * 16 15 14 19 19 C 1.54885 * 102.74710 * 203.38218 * 18 16 15 20 20 C 1.54268 * 104.19938 * 37.94360 * 19 18 16 21 21 H 1.08998 * 117.40938 * 117.57738 * 20 19 18 22 22 C 1.52993 * 118.19977 * 272.21424 * 20 19 18 23 23 C 1.52997 * 60.37898 * 93.61168 * 22 20 19 24 24 H 1.09000 * 119.75048 * 111.12241 * 23 22 20 25 25 H 0.97002 * 120.00347 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46914 * 59.99873 * 10 9 7 27 27 H 1.09000 * 109.47109 * 300.00097 * 10 9 7 28 28 H 1.09002 * 109.47239 * 59.99675 * 14 13 11 29 29 H 1.08998 * 109.46869 * 300.00400 * 14 13 11 30 30 H 1.09002 * 109.47153 * 59.99705 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99896 * 15 14 13 32 32 H 1.08998 * 110.75747 * 321.70092 * 18 16 15 33 33 H 1.08995 * 110.75369 * 85.06893 * 18 16 15 34 34 H 1.08999 * 110.48463 * 156.62356 * 19 18 16 35 35 H 1.09000 * 110.48719 * 279.12744 * 19 18 16 36 36 H 1.09002 * 117.45883 * 201.21623 * 22 20 19 37 37 H 1.09002 * 117.45728 * 346.01024 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7957 -5.5015 -0.0010 13 8 2.8408 -6.3389 0.0003 14 6 2.2612 -7.6701 -0.0009 15 6 3.3801 -8.7136 -0.0009 16 6 2.7693 -10.1164 -0.0028 17 1 2.0957 -10.2370 -0.8512 18 6 2.0203 -10.3833 1.3264 19 6 2.0183 -11.9297 1.4130 20 6 3.4010 -12.3411 0.8664 21 1 4.0747 -12.8621 1.5466 22 6 3.5485 -12.5528 -0.6417 23 6 3.8785 -11.1881 -0.0337 24 1 4.9118 -10.8418 -0.0108 25 1 -0.4851 0.8400 -0.0004 26 1 3.1245 -3.7313 0.8905 27 1 3.1245 -3.7313 -0.8894 28 1 1.6459 -7.7978 -0.8916 29 1 1.6441 -7.7985 0.8883 30 1 3.9958 -8.5861 0.8896 31 1 3.9968 -8.5850 -0.8904 32 1 2.5606 -9.9499 2.1680 33 1 1.0019 -9.9977 1.2800 34 1 1.9053 -12.2537 2.4476 35 1 1.2224 -12.3454 0.7950 36 1 4.3824 -13.1656 -0.9840 37 1 2.6342 -12.6333 -1.2297 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893801097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:29 Heat of formation + Delta-G solvation = -97.757205 kcal Electronic energy + Delta-G solvation = -17538.266355 eV Core-core repulsion = 14599.213240 eV Total energy + Delta-G solvation = -2939.053114 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50445 -40.52360 -37.71148 -34.61318 -34.57867 -31.82018 -31.16591 -28.03184 -27.62109 -24.30759 -22.99761 -22.28985 -21.18788 -20.42684 -19.86991 -18.64465 -17.79985 -17.19702 -16.89013 -16.67995 -16.13141 -15.97105 -15.47133 -14.62295 -14.40154 -14.37224 -14.03731 -13.73426 -13.62921 -13.20756 -12.98246 -12.86950 -12.71162 -12.67443 -12.11823 -12.04244 -11.80060 -11.76702 -11.64848 -11.52941 -11.33438 -11.14383 -10.94808 -10.52170 -10.38658 -8.74195 -8.37257 -6.17419 1.02593 1.12260 1.41324 1.45165 1.54297 1.89153 2.24273 2.74513 2.97631 3.24251 3.43972 3.71063 3.76749 3.92192 3.96941 4.06498 4.17892 4.23673 4.31890 4.40977 4.44402 4.51276 4.54781 4.61102 4.70003 4.75051 4.93526 5.02798 5.06234 5.10249 5.20187 5.31285 5.34907 5.38099 5.40863 5.51465 6.17965 6.69061 7.04181 8.71785 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.064707 B = 0.002692 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.618494 B =10398.127922 C =10623.107340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.140 6.140 10 C -0.109 4.109 11 C 0.487 3.513 12 O -0.522 6.522 13 O -0.353 6.353 14 C 0.060 3.940 15 C -0.098 4.098 16 C -0.058 4.058 17 H 0.077 0.923 18 C -0.127 4.127 19 C -0.097 4.097 20 C -0.171 4.171 21 H 0.116 0.884 22 C -0.152 4.152 23 C -0.165 4.165 24 H 0.116 0.884 25 H 0.273 0.727 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.886 -23.135 0.819 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.087 5.913 10 C -0.257 4.257 11 C 0.330 3.670 12 O -0.411 6.411 13 O -0.270 6.270 14 C -0.014 4.014 15 C -0.135 4.135 16 C -0.076 4.076 17 H 0.096 0.904 18 C -0.164 4.164 19 C -0.134 4.134 20 C -0.189 4.189 21 H 0.134 0.866 22 C -0.188 4.188 23 C -0.183 4.183 24 H 0.134 0.866 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.246 -23.342 0.831 24.770 hybrid contribution 1.239 1.171 0.004 1.705 sum 9.485 -22.171 0.835 24.129 Atomic orbital electron populations 1.70160 1.07948 1.28871 1.47664 1.26135 0.95998 1.03324 0.93525 0.84975 0.77785 0.75502 0.79569 1.18617 1.20356 1.18608 1.23164 0.95526 0.91537 1.59410 0.89551 1.85531 1.09395 0.99158 1.97181 1.23091 1.04198 0.90108 1.08302 1.23002 0.84796 0.87542 0.71701 1.90656 1.18383 1.86187 1.45857 1.86467 1.40470 1.16122 1.83940 1.23341 0.97620 0.77837 1.02567 1.21512 0.96478 0.91237 1.04298 1.21479 0.95922 0.91772 0.98441 0.90444 1.22857 1.00244 0.96265 0.97074 1.21952 0.95292 0.94673 1.01474 1.23330 0.98886 1.03357 0.93357 0.86613 1.23147 1.03499 0.97555 0.94630 1.23214 0.99312 0.89040 1.06692 0.86606 0.91835 0.85981 0.85989 0.91560 0.91339 0.90130 0.90036 0.91028 0.91564 0.90552 0.91353 0.87291 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 2 C 0.02 0.86 5.49 84.86 0.47 1.32 16 3 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.14 -7.63 20.58 -56.49 -1.16 -8.79 16 10 C -0.11 -4.39 6.27 71.23 0.45 -3.94 16 11 C 0.49 18.79 7.98 71.23 0.57 19.36 16 12 O -0.52 -23.56 15.61 21.97 0.34 -23.21 16 13 O -0.35 -10.97 10.22 -51.47 -0.53 -11.49 16 14 C 0.06 1.50 5.31 71.98 0.38 1.88 16 15 C -0.10 -1.76 5.07 30.59 0.16 -1.60 16 16 C -0.06 -0.90 2.69 -9.72 -0.03 -0.93 16 17 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 18 C -0.13 -1.97 5.51 31.89 0.18 -1.80 16 19 C -0.10 -1.29 6.62 31.67 0.21 -1.08 16 20 C -0.17 -2.19 6.94 -10.07 -0.07 -2.26 16 21 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 22 C -0.15 -1.81 10.07 30.59 0.31 -1.50 16 23 C -0.16 -2.25 6.36 -10.07 -0.06 -2.31 16 24 H 0.12 1.49 8.05 -2.39 -0.02 1.47 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.12 4.47 8.14 -2.40 -0.02 4.45 16 27 H 0.12 4.47 8.14 -2.39 -0.02 4.45 16 28 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.07 1.74 7.38 -2.39 -0.02 1.72 16 30 H 0.08 1.39 8.10 -2.39 -0.02 1.38 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.13 8.02 -2.39 -0.02 1.11 16 33 H 0.07 1.09 8.01 -2.39 -0.02 1.07 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.37 325.41 5.20 -63.17 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.04 Total: 13.21 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 3.20 Total: -23.08 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.29 Total: -54.78 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.18 Total: -34.71 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.16 Total: -8.79 kcal Total: -68.37 5.20 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893801097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.591 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds