Wall clock time and date at job start Mon Mar 30 2020 01:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47185 * 240.00077 * 3 2 1 5 5 H 1.48500 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47101 * 120.00051 * 3 2 1 7 7 C 1.38803 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99712 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99962 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47204 * 180.02562 * 10 9 7 12 12 O 1.20835 * 119.99857 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00363 * 179.97438 * 11 10 9 14 14 C 1.45195 * 117.00223 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47167 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47381 * 179.97438 * 15 14 13 17 17 H 1.08998 * 110.53846 * 56.15341 * 16 15 14 18 18 C 1.54897 * 110.48535 * 293.54676 * 16 15 14 19 19 C 1.54889 * 102.74591 * 203.37792 * 18 16 15 20 20 C 1.54268 * 104.19728 * 37.94393 * 19 18 16 21 21 H 1.08995 * 117.40839 * 196.41025 * 20 19 18 22 22 C 1.52994 * 118.19625 * 41.77907 * 20 19 18 23 23 C 1.53873 * 106.59675 * 336.38656 * 20 19 18 24 24 H 1.08999 * 121.33166 * 221.93144 * 23 20 19 25 25 H 0.97002 * 119.99639 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46868 * 60.00047 * 10 9 7 27 27 H 1.09003 * 109.46669 * 299.99883 * 10 9 7 28 28 H 1.08996 * 109.47382 * 59.99622 * 14 13 11 29 29 H 1.09001 * 109.47003 * 299.99908 * 14 13 11 30 30 H 1.09008 * 109.46891 * 59.99737 * 15 14 13 31 31 H 1.09001 * 109.47118 * 299.99879 * 15 14 13 32 32 H 1.09000 * 110.75568 * 321.69103 * 18 16 15 33 33 H 1.09002 * 110.75327 * 85.05965 * 18 16 15 34 34 H 1.08998 * 110.48466 * 156.62292 * 19 18 16 35 35 H 1.09000 * 110.48547 * 279.12998 * 19 18 16 36 36 H 1.09000 * 117.46753 * 13.97962 * 22 20 19 37 37 H 1.09003 * 117.46113 * 158.78749 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7953 -5.5015 -0.0011 13 8 2.8404 -6.3390 -0.0018 14 6 2.2607 -7.6702 -0.0018 15 6 3.3796 -8.7137 -0.0032 16 6 2.7688 -10.1165 -0.0026 17 1 2.0939 -10.2401 -0.8495 18 6 2.0225 -10.3822 1.3285 19 6 2.0206 -11.9286 1.4164 20 6 3.4022 -12.3405 0.8673 21 1 3.5355 -13.3819 0.5744 22 6 4.6220 -11.5192 1.2894 23 6 3.8778 -11.1884 -0.0349 24 1 4.3618 -11.3810 -0.9924 25 1 -0.4850 0.8401 0.0004 26 1 3.1243 -3.7314 0.8894 27 1 3.1243 -3.7314 -0.8906 28 1 1.6441 -7.7980 -0.8914 29 1 1.6450 -7.7984 0.8885 30 1 3.9966 -8.5860 0.8863 31 1 3.9950 -8.5854 -0.8937 32 1 2.5646 -9.9482 2.1686 33 1 1.0040 -9.9965 1.2839 34 1 1.9097 -12.2517 2.4515 35 1 1.2234 -12.3448 0.8004 36 1 4.5015 -10.8356 2.1298 37 1 5.6002 -11.9928 1.2059 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893801099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:31 Heat of formation + Delta-G solvation = -96.292518 kcal Electronic energy + Delta-G solvation = -17604.849363 eV Core-core repulsion = 14665.859762 eV Total energy + Delta-G solvation = -2938.989601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50843 -40.60219 -37.69506 -34.61228 -34.35436 -31.63565 -31.09684 -28.02637 -27.62119 -24.61768 -23.50880 -22.39959 -20.49852 -20.06983 -19.74822 -18.64124 -17.83239 -17.46106 -17.00985 -16.88487 -16.02014 -15.75233 -15.48342 -14.62147 -14.60787 -14.35753 -14.11939 -13.65135 -13.46848 -13.20964 -12.96729 -12.87056 -12.68214 -12.63810 -12.22959 -11.88246 -11.87196 -11.79905 -11.71751 -11.53270 -11.34053 -11.14413 -10.87463 -10.44409 -10.38530 -8.74245 -8.37336 -6.17470 1.02782 1.12278 1.41347 1.45165 1.54319 1.89442 2.24269 2.78070 2.97578 3.25882 3.44328 3.67826 3.71351 3.95966 3.97534 4.08116 4.16649 4.20165 4.26302 4.36390 4.43845 4.49806 4.55327 4.66132 4.72072 4.84487 4.89920 5.03052 5.08952 5.12673 5.24491 5.31431 5.34579 5.39806 5.40906 5.45787 6.17948 6.69254 7.04116 8.71730 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.059690 B = 0.002757 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.977171 B =10153.886186 C =10426.145435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.140 6.140 10 C -0.109 4.109 11 C 0.487 3.513 12 O -0.522 6.522 13 O -0.353 6.353 14 C 0.060 3.940 15 C -0.098 4.098 16 C -0.057 4.057 17 H 0.086 0.914 18 C -0.135 4.135 19 C -0.096 4.096 20 C -0.166 4.166 21 H 0.117 0.883 22 C -0.154 4.154 23 C -0.167 4.167 24 H 0.118 0.882 25 H 0.273 0.727 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -22.962 1.264 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.697 4.697 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.257 4.257 11 C 0.329 3.671 12 O -0.411 6.411 13 O -0.270 6.270 14 C -0.014 4.014 15 C -0.135 4.135 16 C -0.076 4.076 17 H 0.104 0.896 18 C -0.172 4.172 19 C -0.134 4.134 20 C -0.184 4.184 21 H 0.135 0.865 22 C -0.191 4.191 23 C -0.185 4.185 24 H 0.136 0.864 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.474 -23.181 1.257 24.713 hybrid contribution 1.193 1.143 -0.053 1.653 sum 9.666 -22.038 1.204 24.095 Atomic orbital electron populations 1.70161 1.07953 1.28871 1.47659 1.26137 0.95999 1.03325 0.93517 0.84972 0.77786 0.75496 0.79569 1.18618 1.20345 1.18610 1.23166 0.95526 0.91540 1.59423 0.89554 1.85530 1.09389 0.99150 1.97181 1.23093 1.04202 0.90132 1.08287 1.23005 0.84801 0.87550 0.71699 1.90658 1.18373 1.86200 1.45877 1.86472 1.40479 1.16151 1.83921 1.23370 0.97681 0.77827 1.02527 1.21491 0.96401 0.91415 1.04197 1.21486 0.95720 0.91696 0.98656 0.89603 1.22696 1.00566 0.96738 0.97229 1.21932 0.95378 0.94625 1.01435 1.23235 0.94155 0.96793 1.04184 0.86545 1.23344 0.96112 1.02555 0.97102 1.23488 1.01498 0.97738 0.95790 0.86393 0.91831 0.86007 0.85995 0.91493 0.91444 0.90484 0.90123 0.91261 0.91379 0.91065 0.90478 0.89178 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.10 13.22 21.65 0.29 -54.82 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.55 -30.92 9.50 67.96 0.65 -30.27 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 9 S -0.14 -7.63 20.58 -56.49 -1.16 -8.79 16 10 C -0.11 -4.41 6.27 71.23 0.45 -3.96 16 11 C 0.49 18.85 7.98 71.23 0.57 19.41 16 12 O -0.52 -23.62 15.61 21.94 0.34 -23.27 16 13 O -0.35 -11.04 10.22 -51.42 -0.53 -11.57 16 14 C 0.06 1.49 5.31 71.98 0.38 1.88 16 15 C -0.10 -1.78 5.13 30.60 0.16 -1.62 16 16 C -0.06 -0.88 2.84 -9.72 -0.03 -0.91 16 17 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 18 C -0.13 -2.09 5.04 31.89 0.16 -1.93 16 19 C -0.10 -1.27 6.76 31.67 0.21 -1.05 16 20 C -0.17 -2.08 6.97 -10.07 -0.07 -2.15 16 21 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 22 C -0.15 -1.93 9.94 31.44 0.31 -1.62 16 23 C -0.17 -2.25 6.52 -9.22 -0.06 -2.31 16 24 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.12 4.48 8.14 -2.40 -0.02 4.46 16 27 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 28 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.07 1.72 7.38 -2.39 -0.02 1.71 16 30 H 0.08 1.39 8.10 -2.38 -0.02 1.37 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.11 7.29 -2.39 -0.02 1.09 16 33 H 0.07 1.12 8.01 -2.39 -0.02 1.10 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.21 7.27 -2.39 -0.02 1.20 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -68.45 323.82 5.21 -63.25 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.04 Total: 13.40 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 3.20 Total: -23.20 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.29 Total: -54.82 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.18 Total: -34.84 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.16 Total: -8.79 kcal Total: -68.45 5.21 -63.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893801099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.047 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds