Wall clock time and date at job start Mon Mar 30 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99489 * 2 1 4 4 H 1.48505 * 109.47095 * 240.00118 * 3 2 1 5 5 H 1.48499 * 109.47505 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47189 * 120.00566 * 3 2 1 7 7 C 1.37871 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00033 * 359.97438 * 7 2 1 10 10 S 1.81396 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.81393 * 103.00438 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47440 * 179.97438 * 11 10 9 13 13 C 1.49157 * 106.04072 * 305.69998 * 12 11 10 14 14 C 1.51025 * 117.52647 * 235.32230 * 13 12 11 15 15 C 1.52794 * 110.83931 * 34.06625 * 14 13 12 16 16 C 1.52827 * 107.58545 * 296.50649 * 15 14 13 17 17 C 1.50979 * 105.13099 * 177.12653 * 12 11 10 18 18 H 1.09006 * 109.12475 * 3.15380 * 17 12 11 19 19 C 1.54850 * 103.67487 * 247.05456 * 17 12 11 20 20 C 1.51920 * 103.12164 * 343.98256 * 19 17 12 21 21 O 1.20820 * 126.42042 * 209.83431 * 20 19 17 22 22 O 1.34715 * 107.15882 * 29.79635 * 20 19 17 23 23 H 0.96999 * 120.00221 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47057 * 60.00115 * 9 7 2 25 25 H 1.08993 * 109.46994 * 300.00172 * 9 7 2 26 26 H 1.09004 * 109.46906 * 59.99924 * 11 10 9 27 27 H 1.09004 * 109.47134 * 300.00416 * 11 10 9 28 28 H 1.09002 * 107.83008 * 113.29097 * 13 12 11 29 29 H 1.08996 * 107.80390 * 357.33550 * 13 12 11 30 30 H 1.09002 * 109.19678 * 154.40478 * 14 13 12 31 31 H 1.08998 * 109.19650 * 273.73226 * 14 13 12 32 32 H 1.09007 * 109.83361 * 56.07232 * 15 14 13 33 33 H 1.08997 * 109.83318 * 177.02401 * 15 14 13 34 34 H 1.09003 * 109.26601 * 304.69619 * 16 15 14 35 35 H 1.08998 * 109.23853 * 185.29503 * 16 15 14 36 36 H 1.09003 * 110.68986 * 225.57559 * 19 17 12 37 37 H 1.08994 * 110.83890 * 102.46026 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3518 -5.3366 -0.0013 12 6 2.2087 -6.6042 -0.0020 13 6 3.1325 -6.4765 -1.1661 14 6 3.1322 -7.5929 -2.1832 15 6 1.7333 -8.1883 -2.3364 16 6 1.3469 -8.8103 -0.9950 17 6 1.2235 -7.7459 0.0704 18 1 0.2100 -7.3453 0.0448 19 6 1.4860 -8.3681 1.4639 20 6 2.8360 -7.7890 1.8514 21 8 3.6668 -8.3141 2.5541 22 8 2.9335 -6.5806 1.2640 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8896 26 1 0.7229 -5.3231 -0.8916 27 1 0.7222 -5.3237 0.8884 28 1 4.1465 -6.3785 -0.7783 29 1 2.8869 -5.5508 -1.6865 30 1 3.4624 -7.2013 -3.1454 31 1 3.8203 -8.3735 -1.8588 32 1 1.0240 -7.4033 -2.5989 33 1 1.7406 -8.9553 -3.1107 34 1 2.1112 -9.5285 -0.6981 35 1 0.3922 -9.3258 -1.0999 36 1 1.5381 -9.4548 1.3968 37 1 0.7181 -8.0640 2.1752 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917847774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:53 Heat of formation + Delta-G solvation = -115.510257 kcal Electronic energy + Delta-G solvation = -18980.399040 eV Core-core repulsion = 16040.576096 eV Total energy + Delta-G solvation = -2939.822944 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.68426 -39.47180 -37.35206 -35.30093 -34.09228 -33.13187 -30.68916 -29.56545 -26.92292 -25.13611 -23.72841 -23.07600 -22.45207 -20.17993 -18.70839 -17.89300 -17.64486 -17.12231 -16.89883 -16.32024 -16.22225 -15.90999 -15.05140 -14.97326 -14.63887 -14.49230 -14.37412 -14.18000 -13.81790 -13.47193 -13.34253 -12.96536 -12.73984 -12.70577 -12.47921 -12.20420 -12.11596 -11.85032 -11.58565 -11.44663 -11.25476 -11.08684 -11.04306 -10.75030 -10.57731 -8.38899 -8.34449 -6.47147 0.78248 0.99337 1.38891 1.41633 1.50601 2.01194 2.28451 2.35990 2.94180 3.00187 3.07871 3.36520 3.62129 3.76262 3.97903 4.09250 4.23642 4.29728 4.38964 4.47021 4.54718 4.65151 4.72259 4.87507 4.93347 4.94813 4.98565 5.01901 5.19226 5.22743 5.33143 5.40284 5.52061 5.55782 5.80304 5.89025 6.33582 6.59662 7.20773 8.77295 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.004616 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.815990 B = 6064.628655 C = 6414.977148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.089 3.911 10 S -0.300 6.300 11 C -0.094 4.094 12 C 0.158 3.842 13 C -0.134 4.134 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.107 4.107 17 C -0.099 4.099 18 H 0.121 0.879 19 C -0.168 4.168 20 C 0.473 3.527 21 O -0.498 6.498 22 O -0.364 6.364 23 H 0.271 0.729 24 H 0.019 0.981 25 H 0.010 0.990 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -19.831 -4.816 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.076 0.924 9 C -0.059 4.059 10 S -0.073 6.073 11 C -0.242 4.242 12 C 0.121 3.879 13 C -0.173 4.173 14 C -0.147 4.147 15 C -0.158 4.158 16 C -0.144 4.144 17 C -0.119 4.119 18 H 0.139 0.861 19 C -0.206 4.206 20 C 0.316 3.684 21 O -0.384 6.384 22 O -0.283 6.283 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.155 0.845 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.086 -19.693 -4.412 20.181 hybrid contribution -0.863 1.412 0.442 1.713 sum -0.950 -18.280 -3.970 18.731 Atomic orbital electron populations 1.70035 1.07556 1.28605 1.50051 1.25863 0.95880 1.02887 0.93779 0.85377 0.78284 0.77451 0.79235 1.19029 1.19878 1.19510 1.20957 0.93311 0.90458 1.52941 0.92371 1.20744 0.94235 0.93009 0.97863 1.86775 1.20674 1.02136 1.97683 1.24355 0.99996 0.93732 1.06089 1.21208 0.90252 0.95039 0.81429 1.20824 0.99094 1.02291 0.95042 1.21115 0.98991 0.96611 0.97994 1.21510 0.95661 1.01016 0.97593 1.21292 1.04175 0.95932 0.93028 1.21572 1.00167 0.94594 0.95573 0.86139 1.23430 0.93942 1.04813 0.98375 1.24255 0.88781 0.79236 0.76140 1.90641 1.48901 1.61405 1.37413 1.87580 1.72698 1.32916 1.35086 0.92050 0.96262 0.97146 0.87111 0.89814 0.92449 0.89731 0.90464 0.91870 0.91276 0.89048 0.91168 0.87865 0.84528 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 13.29 21.45 0.28 -53.97 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -31.20 9.13 25.60 0.23 -30.96 16 8 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 9 C 0.09 4.73 5.70 71.24 0.41 5.14 16 10 S -0.30 -13.17 19.31 -56.49 -1.09 -14.26 16 11 C -0.09 -2.87 3.99 71.98 0.29 -2.59 16 12 C 0.16 4.03 0.99 -12.68 -0.01 4.01 16 13 C -0.13 -3.44 4.64 28.73 0.13 -3.31 16 14 C -0.11 -1.93 5.88 29.88 0.18 -1.75 16 15 C -0.12 -1.50 5.98 30.47 0.18 -1.32 16 16 C -0.11 -1.15 5.22 29.92 0.16 -1.00 16 17 C -0.10 -1.57 2.62 -11.44 -0.03 -1.60 16 18 H 0.12 1.52 7.28 -2.38 -0.02 1.51 16 19 C -0.17 -2.72 6.53 30.87 0.20 -2.52 16 20 C 0.47 13.58 8.59 71.63 0.62 14.20 16 21 O -0.50 -17.68 18.00 21.53 0.39 -17.30 16 22 O -0.36 -12.03 9.70 -56.64 -0.55 -12.58 16 23 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 27 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 28 H 0.06 1.73 7.85 -2.39 -0.02 1.71 16 29 H 0.08 2.48 6.04 -2.39 -0.01 2.46 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.06 8.11 -2.39 -0.02 1.05 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.75 7.62 -2.39 -0.02 0.73 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.14 1.50 7.54 -2.39 -0.02 1.48 16 37 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.83 309.55 4.92 -66.91 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 1.05 Total: 5.32 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 2.81 Total: -20.27 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.28 Total: -53.97 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.16 Total: -29.87 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -13.17 SS G_CDS: -1.09 Total: -14.26 kcal Total: -71.83 4.92 -66.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.597 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds