Wall clock time and date at job start Mon Mar 30 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86792 * 120.00085 * 2 1 4 4 H 1.48502 * 109.47044 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47318 * 29.99645 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99684 * 3 2 1 7 7 C 1.38806 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00071 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99444 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99745 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47017 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46867 * 180.02562 * 12 11 10 14 14 C 1.34232 * 116.99450 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99784 * 179.97438 * 14 13 12 17 17 C 1.53000 * 119.30055 * 250.95181 * 16 14 13 18 18 C 1.53869 * 121.33026 * 179.11582 * 16 14 13 19 19 H 1.09001 * 121.33489 * 359.43231 * 18 16 14 20 20 C 1.54266 * 106.60032 * 221.93643 * 18 16 14 21 21 C 1.54896 * 104.19600 * 336.39207 * 20 18 16 22 22 C 1.54268 * 117.41139 * 45.29245 * 16 14 13 23 23 H 0.97001 * 120.00147 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47543 * 60.00137 * 10 9 7 25 25 H 1.09001 * 109.47021 * 299.99641 * 10 9 7 26 26 H 1.09001 * 109.47502 * 60.00112 * 11 10 9 27 27 H 1.09001 * 109.47289 * 299.99908 * 11 10 9 28 28 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 29 29 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 30 30 H 1.09005 * 117.45542 * 356.28863 * 17 16 14 31 31 H 1.08997 * 117.46490 * 141.09241 * 17 16 14 32 32 H 1.08995 * 110.49238 * 217.71504 * 20 18 16 33 33 H 1.08997 * 110.48842 * 95.06337 * 20 18 16 34 34 H 1.09005 * 110.75169 * 279.62821 * 21 20 18 35 35 H 1.08991 * 110.75896 * 156.25535 * 21 20 18 36 36 H 1.09006 * 110.48529 * 282.26664 * 22 16 14 37 37 H 1.08993 * 110.48955 * 44.90994 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5957 -3.2363 0.0021 12 6 5.8614 -4.7432 0.0025 13 8 7.2937 -4.9820 0.0043 14 6 7.6979 -6.2620 0.0054 15 8 6.8820 -7.1532 0.0054 16 6 9.1693 -6.5875 0.0066 17 6 9.8073 -7.1752 -1.2538 18 6 9.6667 -8.0434 0.0281 19 1 8.9690 -8.8805 0.0524 20 6 10.8525 -8.0895 1.0139 21 6 11.3748 -6.6317 1.0482 22 6 10.0702 -5.7996 0.9800 23 1 -0.4850 0.8400 -0.0004 24 1 3.6441 -3.4315 -0.8893 25 1 3.6434 -3.4318 0.8907 26 1 6.0380 -2.7896 0.8926 27 1 6.0394 -2.7891 -0.8874 28 1 5.4179 -5.1901 0.8923 29 1 5.4192 -5.1903 -0.8877 30 1 9.1491 -7.3950 -2.0945 31 1 10.8075 -6.8319 -1.5178 32 1 11.6269 -8.7636 0.6479 33 1 10.5143 -8.3969 2.0034 34 1 12.0085 -6.4280 0.1850 35 1 11.9103 -6.4350 1.9769 36 1 10.2736 -4.8025 0.5892 37 1 9.6056 -5.7372 1.9640 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924437197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:13 Heat of formation + Delta-G solvation = -81.994723 kcal Electronic energy + Delta-G solvation = -17664.145710 eV Core-core repulsion = 14725.776109 eV Total energy + Delta-G solvation = -2938.369602 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03899 -39.25518 -36.64055 -33.60976 -32.46318 -31.72404 -29.08262 -26.79659 -25.65729 -24.46772 -22.76926 -21.43383 -20.20036 -19.50611 -17.76904 -17.38362 -16.92591 -16.61760 -15.62358 -15.03861 -14.91612 -14.68582 -14.18320 -13.65141 -13.41213 -13.00948 -12.88157 -12.78054 -12.58042 -12.30295 -11.57767 -11.54725 -11.49641 -11.46494 -11.22334 -11.10225 -10.98925 -10.81610 -10.49802 -10.36402 -10.17500 -10.04934 -9.82853 -9.03253 -8.62400 -6.99102 -6.30742 -4.04145 1.98810 2.42817 2.99953 3.18674 3.28459 3.43321 3.54413 3.94847 4.07392 4.29025 4.39737 4.52108 4.67249 4.76946 4.89270 5.01226 5.03201 5.08088 5.08340 5.14697 5.25193 5.37555 5.38637 5.46298 5.50078 5.64490 5.66931 5.68876 5.78464 5.81058 5.87749 6.04684 6.32492 6.37860 6.56373 7.68337 7.92920 8.42245 9.14570 10.78686 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049009 B = 0.002870 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.191189 B = 9755.379922 C =10102.266982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.100 4.100 12 C 0.071 3.929 13 O -0.348 6.348 14 C 0.503 3.497 15 O -0.509 6.509 16 C -0.155 4.155 17 C -0.119 4.119 18 C -0.129 4.129 19 H 0.123 0.877 20 C -0.098 4.098 21 C -0.130 4.130 22 C -0.083 4.083 23 H 0.271 0.729 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.638 -13.939 0.597 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.004 4.004 13 O -0.265 6.265 14 C 0.346 3.654 15 O -0.398 6.398 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.147 4.147 19 H 0.141 0.859 20 C -0.136 4.136 21 C -0.167 4.167 22 C -0.120 4.120 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.881 -13.181 0.621 27.284 hybrid contribution -1.198 -0.234 -0.035 1.221 sum 22.683 -13.415 0.585 26.360 Atomic orbital electron populations 1.69940 1.05921 1.27769 1.48091 1.24799 0.94527 0.99042 0.93298 0.86665 0.81733 0.83176 0.79743 1.19320 1.20040 1.16136 1.22123 0.86952 0.97513 1.58618 0.89305 1.84161 1.11823 1.04297 1.97555 1.22948 0.96001 1.00085 1.04227 1.21323 0.95905 0.92237 1.04408 1.23248 0.76320 0.98036 1.02768 1.86470 1.28541 1.28190 1.83251 1.22231 0.90135 0.80987 0.72091 1.90666 1.55171 1.48249 1.45675 1.21800 0.89659 0.99907 1.04233 1.23420 1.02057 0.99815 0.90307 1.23820 0.99971 0.92447 0.98427 0.85942 1.21999 0.96007 0.97195 0.98352 1.22554 0.96869 0.94738 1.02580 1.21862 0.93726 0.98707 0.97702 0.91915 0.91015 0.90979 0.90249 0.90250 0.91032 0.91038 0.87487 0.87307 0.90631 0.90407 0.90841 0.90526 0.90109 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.44 27.74 -169.99 -4.72 16.73 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 7 C -0.50 -14.63 10.04 30.94 0.31 -14.32 16 8 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 9 S -0.21 -5.00 19.41 -107.50 -2.09 -7.08 16 10 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.03 5.47 37.16 0.20 1.23 16 13 O -0.35 -4.90 10.16 -39.26 -0.40 -5.30 16 14 C 0.50 6.81 7.58 36.01 0.27 7.08 16 15 O -0.51 -8.21 16.54 -18.75 -0.31 -8.52 16 16 C -0.15 -1.54 2.80 -154.54 -0.43 -1.97 16 17 C -0.12 -0.93 9.74 -25.42 -0.25 -1.17 16 18 C -0.13 -1.06 6.76 -88.19 -0.60 -1.65 16 19 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.10 -0.60 6.78 -25.07 -0.17 -0.77 16 21 C -0.13 -0.75 6.43 -24.73 -0.16 -0.91 16 22 C -0.08 -0.67 6.42 -25.07 -0.16 -0.83 16 23 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 25 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.11 0.64 7.23 -51.93 -0.38 0.26 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.37 7.39 -51.93 -0.38 -0.02 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -32.16 324.36 -8.69 -40.86 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.83 Total: -1.77 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.01 Total: -13.85 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.78 Total: -25.95 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.71 Total: -13.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.73 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.09 Total: -7.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.16 -8.69 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924437197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.136 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds