Wall clock time and date at job start Mon Mar 30 2020 01:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46825 * 124.33333 * 2 1 4 4 C 1.54481 * 105.44388 * 197.00180 * 3 2 1 5 5 C 1.54625 * 101.79703 * 334.62720 * 4 3 2 6 6 H 1.09010 * 110.48568 * 143.45878 * 5 4 3 7 7 C 1.50691 * 110.48899 * 266.10150 * 5 4 3 8 8 O 1.20827 * 120.00235 * 0.02562 * 7 5 4 9 9 O 1.34234 * 120.00329 * 180.02562 * 7 5 4 10 10 C 1.45194 * 117.00062 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.46863 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00203 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.37093 * 120.00209 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99492 * 359.97438 * 14 13 11 16 16 C 1.38946 * 120.00209 * 180.02562 * 14 13 11 17 17 N 1.31417 * 119.99944 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47380 * 90.00064 * 18 16 14 20 20 H 1.48500 * 109.47037 * 210.00247 * 18 16 14 21 21 H 1.48500 * 109.47146 * 329.99657 * 18 16 14 22 22 C 1.34414 * 124.34881 * 180.02562 * 2 1 3 23 23 O 1.21279 * 124.94846 * 359.62238 * 22 2 1 24 24 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47150 * 299.93458 * 1 2 3 26 26 H 1.08998 * 109.46928 * 59.93390 * 1 2 3 27 27 H 1.08998 * 110.23857 * 78.01832 * 3 2 1 28 28 H 1.09000 * 110.28306 * 316.00091 * 3 2 1 29 29 H 1.09002 * 110.96936 * 216.49131 * 4 3 2 30 30 H 1.09003 * 110.97019 * 92.76754 * 4 3 2 31 31 H 1.09002 * 109.47526 * 299.99178 * 10 9 7 32 32 H 1.08997 * 109.47598 * 59.99733 * 10 9 7 33 33 H 0.97001 * 119.99941 * 359.97438 * 13 11 10 34 34 H 0.97007 * 119.99669 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7010 0.7490 -0.4354 5 6 3.6898 -0.7377 -0.0107 6 1 4.2327 -1.3454 -0.7349 7 6 4.2839 -0.8979 1.3648 8 8 4.6839 0.0705 1.9667 9 8 4.3688 -2.1163 1.9216 10 6 4.9517 -2.1953 3.2491 11 6 4.9629 -3.6307 3.7082 12 8 4.5226 -4.5013 2.9877 13 7 5.4624 -3.9469 4.9194 14 6 5.4731 -5.2527 5.3369 15 1 5.0810 -6.0279 4.6952 16 6 5.9875 -5.5787 6.5858 17 7 5.9982 -6.8305 6.9857 18 14 6.6651 -4.2377 7.6958 19 1 5.5762 -3.7109 8.5572 20 1 7.7433 -4.7991 8.5488 21 1 7.2145 -3.1372 6.8639 22 6 2.2234 -1.1097 -0.0005 23 8 1.7947 -2.2442 0.0055 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5128 0.8906 26 1 -0.3633 0.5149 -0.8894 27 1 2.3305 1.6435 1.0004 28 1 1.8989 1.9393 -0.7102 29 1 4.4754 1.3010 0.0972 30 1 3.8274 0.8458 -1.5137 31 1 5.9727 -1.8146 3.2209 32 1 4.3599 -1.5972 3.9420 33 1 5.8149 -3.2507 5.4955 34 1 6.3577 -7.0580 7.8575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116665686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:37 Heat of formation + Delta-G solvation = -137.253904 kcal Electronic energy + Delta-G solvation = -20504.458851 eV Core-core repulsion = 17017.399817 eV Total energy + Delta-G solvation = -3487.059034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34170 -39.78722 -38.29471 -36.82339 -36.09555 -34.02986 -33.23518 -31.76758 -29.24758 -27.93850 -27.05110 -24.59919 -23.15648 -21.05795 -19.83640 -19.61783 -18.58143 -18.22563 -17.11812 -16.74419 -16.45053 -15.88860 -15.58736 -15.19552 -14.80303 -14.29220 -14.07415 -13.74106 -13.61745 -13.15992 -13.03539 -12.83674 -12.55086 -12.42002 -12.26373 -12.18329 -11.86263 -11.60615 -11.24865 -10.70179 -10.63251 -10.56836 -10.04358 -10.01827 -9.64573 -9.02771 -8.62798 -8.25959 -6.35939 -3.88704 1.85454 2.20281 2.62122 2.81446 3.00234 3.04953 3.13450 3.58721 3.88516 4.01166 4.06134 4.29061 4.48482 4.67739 4.88761 4.99042 5.04956 5.12882 5.13373 5.22078 5.32559 5.45289 5.46476 5.53818 5.59283 5.69480 6.16578 6.39930 6.72884 7.46694 7.65437 7.88500 8.04361 8.51418 8.87388 9.33108 9.69483 10.76485 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.003975 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.391515 B = 7042.482741 C = 7386.278318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.625 5.625 3 C 0.101 3.899 4 C -0.121 4.121 5 C -0.121 4.121 6 H 0.146 0.854 7 C 0.478 3.522 8 O -0.505 6.505 9 O -0.311 6.311 10 C 0.057 3.943 11 C 0.447 3.553 12 O -0.550 6.550 13 N -0.581 5.581 14 C -0.307 4.307 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.876 5.876 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.268 1.268 22 C 0.526 3.474 23 O -0.494 6.494 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.372 0.628 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 20.888 -12.785 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.361 5.361 3 C -0.022 4.022 4 C -0.158 4.158 5 C -0.144 4.144 6 H 0.164 0.836 7 C 0.320 3.680 8 O -0.394 6.394 9 O -0.224 6.224 10 C -0.021 4.021 11 C 0.232 3.768 12 O -0.431 6.431 13 N -0.221 5.221 14 C -0.436 4.436 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.515 5.515 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.194 1.194 22 C 0.310 3.690 23 O -0.366 6.366 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.206 0.794 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.789 19.747 -12.889 24.281 hybrid contribution 0.685 1.106 1.180 1.756 sum -5.104 20.852 -11.709 24.454 Atomic orbital electron populations 1.21596 0.77373 1.04166 1.01585 1.48132 1.06826 1.07101 1.74043 1.22168 0.90073 0.87351 1.02637 1.22690 0.98065 0.92003 1.03057 1.21780 0.96661 1.01355 0.94598 0.83611 1.22707 0.76086 0.81670 0.87560 1.90645 1.45699 1.40225 1.62788 1.86636 1.72976 1.30514 1.32295 1.22823 0.99346 0.98630 0.81277 1.19173 0.85481 0.88438 0.83734 1.90638 1.49142 1.49077 1.54284 1.42022 1.55810 1.09329 1.14951 1.19438 1.39255 0.82869 1.01993 0.85993 1.25030 0.97461 0.96500 0.96917 1.69622 1.44769 1.16439 1.20684 0.86675 0.79791 0.81600 0.81397 1.19446 1.19961 1.19385 1.20105 0.87453 0.84828 0.76566 1.90842 1.77429 1.20544 1.47815 0.89609 0.91862 0.91836 0.90458 0.89674 0.87056 0.88433 0.89168 0.89397 0.79447 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.14 59.85 0.67 1.42 16 2 N -0.62 -6.40 3.33 -180.24 -0.60 -7.00 16 3 C 0.10 0.71 7.35 -3.09 -0.02 0.69 16 4 C -0.12 -0.86 6.50 -25.10 -0.16 -1.02 16 5 C -0.12 -1.40 3.44 -91.79 -0.32 -1.71 16 6 H 0.15 1.43 8.14 -51.92 -0.42 1.01 16 7 C 0.48 7.24 7.27 36.00 0.26 7.50 16 8 O -0.50 -7.71 15.22 -18.75 -0.29 -7.99 16 9 O -0.31 -5.94 9.75 -45.91 -0.45 -6.39 16 10 C 0.06 1.05 5.94 36.01 0.21 1.27 16 11 C 0.45 10.77 7.86 -10.98 -0.09 10.68 16 12 O -0.55 -15.91 16.08 -14.11 -0.23 -16.13 16 13 N -0.58 -14.13 5.09 -10.96 -0.06 -14.18 16 14 C -0.31 -8.79 10.16 -14.94 -0.15 -8.94 16 15 H 0.12 3.98 7.39 -52.48 -0.39 3.60 16 16 C 0.04 1.23 5.50 -17.47 -0.10 1.13 16 17 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 18 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 22 C 0.53 7.32 7.33 -10.86 -0.08 7.24 16 23 O -0.49 -9.23 17.35 5.56 0.10 -9.13 16 24 H 0.09 0.83 7.53 -51.93 -0.39 0.44 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.11 0.81 6.97 -51.93 -0.36 0.45 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 32 H 0.09 1.44 8.13 -51.93 -0.42 1.01 16 33 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 34 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -37.41 302.83 -4.59 -42.01 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.92 Total: 6.22 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 0.23 Total: 18.26 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.12 Total: -45.95 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.86 Total: -39.64 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -37.41 -4.59 -42.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116665686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.248 kcal (2) G-P(sol) polarization free energy of solvation -37.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds