Wall clock time and date at job start Mon Mar 30 2020 01:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46825 * 124.33333 * 2 1 4 4 C 1.54481 * 105.44388 * 197.00180 * 3 2 1 5 5 C 1.54625 * 101.79703 * 334.62720 * 4 3 2 6 6 H 1.09010 * 110.48568 * 143.45878 * 5 4 3 7 7 C 1.50691 * 110.48899 * 266.10150 * 5 4 3 8 8 O 1.20827 * 120.00235 * 0.02562 * 7 5 4 9 9 O 1.34234 * 120.00329 * 180.02562 * 7 5 4 10 10 C 1.45194 * 117.00062 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.46863 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00203 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.37093 * 120.00209 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99492 * 359.97438 * 14 13 11 16 16 C 1.38946 * 120.00209 * 180.02562 * 14 13 11 17 17 N 1.31417 * 119.99944 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47380 * 90.00064 * 18 16 14 20 20 H 1.48500 * 109.47037 * 210.00247 * 18 16 14 21 21 H 1.48500 * 109.47146 * 329.99657 * 18 16 14 22 22 C 1.34414 * 124.34881 * 180.02562 * 2 1 3 23 23 O 1.21279 * 124.94846 * 359.62238 * 22 2 1 24 24 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47150 * 299.93458 * 1 2 3 26 26 H 1.08998 * 109.46928 * 59.93390 * 1 2 3 27 27 H 1.08998 * 110.23857 * 78.01832 * 3 2 1 28 28 H 1.09000 * 110.28306 * 316.00091 * 3 2 1 29 29 H 1.09002 * 110.96936 * 216.49131 * 4 3 2 30 30 H 1.09003 * 110.97019 * 92.76754 * 4 3 2 31 31 H 1.09002 * 109.47526 * 299.99178 * 10 9 7 32 32 H 1.08997 * 109.47598 * 59.99733 * 10 9 7 33 33 H 0.97001 * 119.99941 * 359.97438 * 13 11 10 34 34 H 0.97007 * 119.99669 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7010 0.7490 -0.4354 5 6 3.6898 -0.7377 -0.0107 6 1 4.2327 -1.3454 -0.7349 7 6 4.2839 -0.8979 1.3648 8 8 4.6839 0.0705 1.9667 9 8 4.3688 -2.1163 1.9216 10 6 4.9517 -2.1953 3.2491 11 6 4.9629 -3.6307 3.7082 12 8 4.5226 -4.5013 2.9877 13 7 5.4624 -3.9469 4.9194 14 6 5.4731 -5.2527 5.3369 15 1 5.0810 -6.0279 4.6952 16 6 5.9875 -5.5787 6.5858 17 7 5.9982 -6.8305 6.9857 18 14 6.6651 -4.2377 7.6958 19 1 5.5762 -3.7109 8.5572 20 1 7.7433 -4.7991 8.5488 21 1 7.2145 -3.1372 6.8639 22 6 2.2234 -1.1097 -0.0005 23 8 1.7947 -2.2442 0.0055 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5128 0.8906 26 1 -0.3633 0.5149 -0.8894 27 1 2.3305 1.6435 1.0004 28 1 1.8989 1.9393 -0.7102 29 1 4.4754 1.3010 0.0972 30 1 3.8274 0.8458 -1.5137 31 1 5.9727 -1.8146 3.2209 32 1 4.3599 -1.5972 3.9420 33 1 5.8149 -3.2507 5.4955 34 1 6.3577 -7.0580 7.8575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116665686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:37 Heat of formation + Delta-G solvation = -166.521566 kcal Electronic energy + Delta-G solvation = -20505.727992 eV Core-core repulsion = 17017.399817 eV Total energy + Delta-G solvation = -3488.328175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.38806 -41.00593 -40.12439 -38.00862 -37.27233 -36.12720 -34.02949 -33.88728 -30.59720 -29.01985 -27.79453 -26.49676 -24.14071 -21.99954 -21.59760 -20.82531 -20.56341 -19.31932 -18.20348 -18.00792 -17.60711 -17.54667 -16.89192 -16.61867 -16.12657 -15.71320 -15.34466 -14.85273 -14.80258 -14.72587 -14.27405 -14.03989 -13.96652 -13.73883 -13.49521 -13.22649 -13.02095 -12.51773 -12.48186 -12.20806 -12.01470 -11.94322 -11.85188 -11.61787 -11.10753 -10.65542 -10.36985 -9.81641 -8.48064 -6.12104 0.72316 1.06474 1.28580 1.32371 1.43128 1.56358 1.72422 1.96442 2.19085 2.74435 3.05576 3.09241 3.28344 3.54067 3.81024 3.92060 4.03518 4.07464 4.14221 4.32984 4.40135 4.62021 4.67767 4.84648 4.93372 5.06902 5.17936 5.44484 5.45498 5.82174 5.89178 6.38061 6.50630 6.74425 6.93095 7.22116 7.75361 8.68875 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.003975 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.391515 B = 7042.482741 C = 7386.278318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.095 3.905 4 C -0.107 4.107 5 C -0.123 4.123 6 H 0.158 0.842 7 C 0.477 3.523 8 O -0.503 6.503 9 O -0.346 6.346 10 C 0.067 3.933 11 C 0.443 3.557 12 O -0.611 6.611 13 N -0.573 5.573 14 C -0.337 4.337 15 H 0.057 0.943 16 C -0.008 4.008 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.255 1.255 20 H -0.270 1.270 21 H -0.229 1.229 22 C 0.511 3.489 23 O -0.561 6.561 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.394 0.606 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 25.773 -12.602 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.352 5.352 3 C -0.026 4.026 4 C -0.144 4.144 5 C -0.145 4.145 6 H 0.175 0.825 7 C 0.320 3.680 8 O -0.391 6.391 9 O -0.261 6.261 10 C -0.010 4.010 11 C 0.231 3.769 12 O -0.495 6.495 13 N -0.215 5.215 14 C -0.466 4.466 15 H 0.075 0.925 16 C -0.208 4.208 17 N -0.565 5.565 18 Si 0.784 3.216 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.152 1.152 22 C 0.297 3.703 23 O -0.439 6.439 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.230 0.770 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.874 24.729 -12.712 28.229 hybrid contribution 0.315 -0.438 1.050 1.181 sum -4.559 24.291 -11.662 27.329 Atomic orbital electron populations 1.21795 0.76330 1.03287 1.03977 1.48383 1.07824 1.07260 1.71691 1.22494 0.89671 0.86504 1.03948 1.22832 0.98177 0.88175 1.05216 1.22008 0.94898 1.04878 0.92698 0.82454 1.23314 0.75869 0.80381 0.88482 1.90629 1.45770 1.39674 1.63057 1.86644 1.73736 1.33249 1.32488 1.22677 1.02057 0.94054 0.82178 1.20261 0.83241 0.90631 0.82812 1.90610 1.51232 1.51750 1.55925 1.41774 1.55994 1.08190 1.15572 1.19008 1.41382 0.83781 1.02441 0.92518 1.26144 0.96666 0.99871 0.98103 1.69795 1.45356 1.19646 1.21712 0.85372 0.79249 0.78300 0.78691 1.17882 1.19440 1.15243 1.20596 0.88838 0.84722 0.76113 1.90802 1.78681 1.23176 1.51209 0.92192 0.90272 0.88529 0.90478 0.85643 0.86573 0.84958 0.85631 0.86557 0.76951 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.14 127.77 1.42 2.68 16 2 N -0.62 -11.44 3.33 -842.74 -2.81 -14.25 16 3 C 0.10 0.96 7.35 86.82 0.64 1.60 16 4 C -0.11 -1.10 6.50 31.65 0.21 -0.90 16 5 C -0.12 -2.62 3.44 -11.55 -0.04 -2.66 16 6 H 0.16 2.91 8.14 -2.38 -0.02 2.89 16 7 C 0.48 13.69 7.27 71.23 0.52 14.21 16 8 O -0.50 -13.86 15.22 21.96 0.33 -13.52 16 9 O -0.35 -13.16 9.75 -45.10 -0.44 -13.60 16 10 C 0.07 2.38 5.94 71.24 0.42 2.81 16 11 C 0.44 21.76 7.86 87.66 0.69 22.45 16 12 O -0.61 -37.39 16.08 15.76 0.25 -37.13 16 13 N -0.57 -27.96 5.09 -306.98 -1.56 -29.52 16 14 C -0.34 -20.18 10.16 84.04 0.85 -19.33 16 15 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 16 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 17 N -0.93 -55.76 13.96 21.66 0.30 -55.45 16 18 Si 0.97 38.35 27.74 68.60 1.90 40.25 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 22 C 0.51 14.13 7.33 87.90 0.64 14.78 16 23 O -0.56 -22.11 17.35 -3.03 -0.05 -22.16 16 24 H 0.06 1.20 7.53 -2.39 -0.02 1.18 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.12 1.18 6.97 -2.39 -0.02 1.17 16 30 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.13 3.57 8.13 -2.39 -0.02 3.55 16 32 H 0.12 3.47 8.13 -2.39 -0.02 3.45 16 33 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 34 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -90.46 302.83 4.30 -86.17 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.55 Total: 23.56 kcal Atomic # 6 Polarization: 29.84 SS G_CDS: 5.82 Total: 35.67 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.07 Total: -99.23 kcal Atomic # 8 Polarization: -86.51 SS G_CDS: 0.10 Total: -86.42 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.25 kcal Total: -90.46 4.30 -86.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116665686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.356 kcal (2) G-P(sol) polarization free energy of solvation -90.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds