Wall clock time and date at job start Mon Mar 30 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00040 * 2 1 4 4 C 1.50697 * 109.47134 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.29121 * 89.97260 * 4 3 2 6 6 O 1.21293 * 110.25189 * 180.02562 * 5 4 3 7 7 C 1.33641 * 109.81516 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55500 * 179.97438 * 7 6 5 9 9 O 1.45198 * 109.47036 * 270.02303 * 8 7 6 10 10 C 1.34231 * 116.99983 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00142 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00053 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47517 * 59.99934 * 12 10 9 14 14 C 1.53000 * 109.47241 * 299.99973 * 12 10 9 15 15 C 1.50699 * 109.47290 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99801 * 359.97438 * 15 12 10 17 17 C 1.37882 * 120.00283 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99722 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00027 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47232 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47298 * 120.00003 * 19 17 15 22 22 H 1.48500 * 109.47076 * 239.99850 * 19 17 15 23 23 N 1.31130 * 106.89473 * 0.22398 * 7 6 5 24 24 H 1.09004 * 109.47361 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47036 * 300.00033 * 1 2 3 26 26 H 1.08999 * 109.47179 * 59.99886 * 1 2 3 27 27 H 1.08994 * 109.47521 * 60.00000 * 3 2 1 28 28 H 1.09003 * 109.46848 * 299.99885 * 3 2 1 29 29 H 1.09002 * 109.47060 * 30.02527 * 8 7 6 30 30 H 1.09001 * 109.47380 * 150.02615 * 8 7 6 31 31 H 1.09002 * 109.47368 * 179.97438 * 14 12 10 32 32 H 1.09005 * 109.47326 * 300.00399 * 14 12 10 33 33 H 1.09003 * 109.46945 * 60.00367 * 14 12 10 34 34 H 0.97000 * 119.99888 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2788 1.1253 -1.0484 6 8 5.4410 1.0329 -0.7138 7 6 5.5292 1.0254 0.6197 8 6 6.7926 0.9242 1.4351 9 8 7.0896 -0.4730 1.6960 10 6 8.1914 -0.7377 2.4154 11 8 8.8846 0.1680 2.8143 12 6 8.5640 -2.1646 2.7256 13 1 8.7199 -2.7100 1.7949 14 6 7.4360 -2.8249 3.5208 15 6 9.8318 -2.1871 3.5400 16 1 10.3192 -1.2607 3.8060 17 6 10.3695 -3.3902 3.9456 18 7 9.7756 -4.5182 3.6221 19 14 11.9406 -3.4180 4.9556 20 1 12.4067 -2.0267 5.1843 21 1 11.6777 -4.0735 6.2619 22 1 12.9866 -4.1758 4.2231 23 7 4.3060 1.1175 1.0831 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 7.6180 1.3743 0.8835 30 1 6.6580 1.4497 2.3805 31 1 7.7052 -3.8571 3.7448 32 1 7.2800 -2.2795 4.4516 33 1 6.5187 -2.8087 2.9321 34 1 10.1541 -5.3646 3.9071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118404858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:48 Heat of formation + Delta-G solvation = -57.569063 kcal Electronic energy + Delta-G solvation = -20034.728268 eV Core-core repulsion = 16551.124628 eV Total energy + Delta-G solvation = -3483.603640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.80299 -39.81111 -38.38105 -36.28985 -35.81423 -33.96384 -33.22363 -30.70687 -29.05543 -28.11697 -26.28144 -25.24438 -23.86736 -23.11008 -21.67119 -20.05845 -18.34848 -17.89523 -16.92398 -16.68932 -16.44955 -16.09762 -15.91801 -15.78982 -15.73212 -14.67238 -13.81457 -13.55466 -13.08063 -12.92677 -12.80790 -12.45003 -12.26055 -12.15374 -11.66937 -11.56415 -11.27194 -11.10236 -10.82948 -10.74981 -10.45788 -10.36164 -10.31787 -10.18108 -10.09469 -9.28027 -9.08477 -8.49458 -6.14330 -4.20582 0.81026 1.76558 2.47025 3.09449 3.12278 3.27528 3.34842 3.39198 3.47850 3.76874 3.94212 4.38924 4.58223 4.72531 4.91979 4.96213 5.00724 5.17747 5.18640 5.21004 5.32594 5.45575 5.73072 5.89830 6.61806 6.62740 6.79490 6.81856 6.98830 7.37768 7.70129 7.88969 7.91964 8.07633 8.64634 8.88019 9.45435 10.92999 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.003502 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.085243 B = 7993.746034 C = 8531.867236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.158 3.842 4 C 0.165 3.835 5 N -0.361 5.361 6 O 0.097 5.903 7 C 0.194 3.806 8 C 0.154 3.846 9 O -0.359 6.359 10 C 0.473 3.527 11 O -0.509 6.509 12 C 0.060 3.940 13 H 0.068 0.932 14 C -0.135 4.135 15 C -0.515 4.515 16 H 0.078 0.922 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.450 5.450 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.024 0.976 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.852 10.505 -6.898 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.080 3.920 4 C -0.108 4.108 5 N -0.067 5.067 6 O 0.033 5.967 7 C -0.027 4.027 8 C 0.078 3.922 9 O -0.277 6.277 10 C 0.317 3.683 11 O -0.395 6.395 12 C 0.041 3.959 13 H 0.085 0.915 14 C -0.193 4.193 15 C -0.552 4.552 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.185 5.185 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.182 10.480 -7.253 19.823 hybrid contribution 0.717 0.209 0.523 0.912 sum -14.465 10.689 -6.729 19.203 Atomic orbital electron populations 1.22821 0.79599 1.03559 1.00338 1.87978 1.20621 1.25939 1.95524 1.20379 0.82365 0.86356 1.02917 1.25357 0.99236 1.02481 0.83761 1.74637 0.89635 1.18590 1.23809 1.85330 1.22323 1.64223 1.24856 1.28294 0.96202 0.96364 0.81797 1.20881 0.88085 0.85118 0.98113 1.86726 1.46916 1.25248 1.68801 1.25574 0.75210 0.95262 0.72223 1.90529 1.50979 1.48169 1.49790 1.18847 0.96378 0.81722 0.98918 0.91462 1.21759 0.94882 1.04582 0.98079 1.21162 1.06672 0.93930 1.33480 0.90425 1.24945 0.97803 0.95216 0.96006 1.69890 1.39496 0.97528 1.45968 0.86302 0.82462 0.78340 0.79600 1.19453 1.20869 1.20877 1.71902 0.99579 1.17976 1.29083 0.88919 0.93431 0.93640 0.89608 0.90198 0.87490 0.86664 0.88419 0.94775 0.95697 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.57 10.69 -35.23 -0.38 -4.94 16 3 C 0.16 1.64 6.56 36.00 0.24 1.88 16 4 C 0.16 2.32 7.85 -156.37 -1.23 1.09 16 5 N -0.36 -5.34 12.16 30.90 0.38 -4.96 16 6 O 0.10 1.41 11.31 18.11 0.20 1.61 16 7 C 0.19 2.85 8.15 -13.06 -0.11 2.74 16 8 C 0.15 2.24 6.09 36.01 0.22 2.46 16 9 O -0.36 -6.82 10.11 -39.26 -0.40 -7.21 16 10 C 0.47 10.48 7.25 36.00 0.26 10.74 16 11 O -0.51 -11.97 15.21 -18.75 -0.29 -12.26 16 12 C 0.06 1.49 2.74 -92.92 -0.25 1.23 16 13 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 14 C -0.14 -3.17 8.90 37.16 0.33 -2.83 16 15 C -0.51 -14.02 8.37 -34.44 -0.29 -14.31 16 16 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 19 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.45 -6.91 11.55 -9.87 -0.11 -7.02 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.11 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.12 1.55 8.13 -51.93 -0.42 1.13 16 31 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -31.26 307.93 -4.19 -35.45 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.03 Total: -3.46 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 0.19 Total: 5.92 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.89 Total: -35.77 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.85 Total: -22.80 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.26 -4.19 -35.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118404858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.122 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds